Detailed information on CNT0001750 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001750

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MKKLGREVRKTTCYWLTRNNEQKQEVLLT*

>peptide 2 (52 aa)
MNKSKKFFLLESNGCPSQQQPFVQVSLLSRIGKQQRSFVGPTAKNKTSKPPL*

>peptide 3 (53 aa)
RGILLGIYPYSLRNCSLSPFLSLRTCFFEAPHPLSQRPNQASCGSMHYVESKE*

>peptide 4 (52 aa)
MGVQVNSSPLFRCLCFQESVSNRDRLLVQLQKIKRVSHPYRDLRYCVQLHGA*

Sequence

>CNT0001750
GTCGAGGTATATTATTGGGCATTTACCCATATTCTCTGCGTAATTGCTCTCTCTCCCCTTTCTTGAGCCTGCGAACTTGTTTTTTCGAGGCTCCTCATCC
ACTATCTCAGAGACCAAACCAAGCCAGTTGTGGCTCAATGCACTATGTGGAATCGAAGGAATGAAAAAGTTGGGGAGAGAGGTTAGGAAGACAACTTGTT
ATTGGTTAACAAGAAATAATGAACAAAAGCAAGAAGTTCTTCTTACTTGAGAGTAATGGGTGTCCAAGTCAACAGCAGCCCTTTGTTCAGGTGTCTTTGC
TTTCAAGAATCGGTAAGCAACAGAGATCGTTTGTTGGTCCAACTGCAAAAAATAAAACGAGTAAGCCACCCTTATAGAGATTTGAGGTACTGTGTCCAAC
TTCATGGTGCCTAAAACTTGAAACTAGTGTAAACATGGATCAGACATTATATATCTCACTCCACATACATTTCTGTTTTCTCATACATTAAGAATGTGAA
AAATTATAAGATTGCAGATACATTTCTTTTTTTCCTTTGTACCAGTGCAACCTCATGGAAATTTATTATAGTTGTTCAACTCTTTTCTTTCAATTGTTAA
AGATGACAAGAGATAAACAGTAGATATTTAAGATACAA

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA14G32900.1 Uncharacterized protein protein coding CNT0001750 1386 513 CDS Cis
GLYMA19G16680.2 Uncharacterized protein protein coding CNT0001750 498 391 CDS Trans