Detailed information on CNT0001754 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q6ICY4|MTPC2_ARATH, E-value = 1e-08

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0001754

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.7851.6112.3780.9761.7021.6030.8361.56900.3490002.4480.99leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.6

Peptides detected in this lncRNA

>peptide 1 (32 aa)
ILGAKRHSLGLTFYEPRVIGDVNSDMRISSNS*

>peptide 2 (69 aa)
MKQLKDKFGNKMSLNVAYSTTEWLFGLFTGCVGLVLDAVHLTFGCGLLTFLLFVMAASRKKADQEYTYG*

>peptide 3 (34 aa)
FLGLKDIALDLLFMNPESSVMSTVICAYQVTAKE*

Sequence

>CNT0001754
ATTCTTGGGGCTAAAAGACATAGCCTTGGACTTACTTTTTATGAACCCAGAGTCATCGGTGATGTCAACAGTGATATGCGCATATCAAGTAACAGCTAAA
GAGTAAACAAGTTTTGAAAAAGTGGAGACCAAACATCAGAGAGAGAGGATGTCAAGAGTTTGAATGGTAGAGTGGGGAGTTACAAATGAAGCAGCTAAAG
GATAAATTTGGTAATAAAATGTCGCTCAATGTCGCGTACTCCACCACCGAATGGCTCTTTGGACTCTTCACCGGTTGCGTAGGTTTGGTGCTTGATGCGG
TTCACTTGACTTTTGGATGTGGTCTTCTTACATTTTTGTTATTTGTTATGGCCGCGTCTAGGAAGAAAGCCGATCAAGAGTATACTTATGGGTGAGATTT
ATTTACTTATTTATTGTCAGTACCTGTCAACAATGCTTCATTTCTTGGTTTCTACTTAAGTACTGTAACTGAATTTTGTTGCCTAAAGTATGTAGGACTG
TAGGAGAGGGGTGCTTGGATAGTTCTTCTGGAAATAACCCTGTAATTGCTTTTGCCTTTTCTATTATAGTTATAATTGTAATAATTAGTTTTGGAGAATT
TTTCTGTACAATTATGTCATGTATCAAATTGTAGAATTCATAAGGTATGAGTGAATATGTATGACA