Detailed information on CNT0001755 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LUD7|CALS8_ARATH, E-value = 3e-06

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001755

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.4682.662.9691.1151.3133.2383.1082.5563.4975.8733.5644.5572.8290.8391.64leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.5

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MWGLLGVYQARRTSIMQFLLPIPAILLVLPT*

>peptide 2 (36 aa)
MLDTGKIQWKSIHKHYNTYLFWKSFQVTMIPTNHNS*

>peptide 3 (40 aa)
MVVSHCLRRPRVFRAPNLINLRFRRTVYRFLLSSYTICSF*

>peptide 4 (29 aa)
MHHYTSNVHKIVKFYALIHLLFLQVQVLI*

>peptide 5 (38 aa)
MSFLLHKFLRVSCICIVNALFLVLVSGALATVYSVITI*

>peptide 6 (51 aa)
MKYPSIYPKYYFLLVNLIFQFPILILTGTYILVMWFSFSIFLFSSLLFTLF*

>peptide 7 (57 aa)
MMRTFHFQERSSLLRRLDTFNDLEVTLRNSGDNHLEEPISITSLETFSLSYNVFSSP*

>peptide 8 (58 aa)
MLYFWFWFQVHWPLSIVLSPYNGQVVLDAPLHIKCPQNCQILCVNPLVVSTSSSAHLT*

>peptide 9 (44 aa)
MMILLYIALVREVKSECLIQEKYSGKAFTSIIILIYFGNLSKLQ*

>peptide 10 (74 aa)
MQRLFNLIVRKFVVANVGPTGCIPSQKDINNAVLITNSCNSLSVTNLNMINSPKSHIHVNGFEGNIFYKTLWRS*

>peptide 11 (134 aa)
MYIYVSETNCIINLYTRLHPVVIPLFASFKSRSSCDVVLYCQHCINDSSHNHSRIKLSIPCVVNEKGNISLLLGQELVLDLLVSPPPYLAPFTIGPIVLK
GVNYASGGGGIFVTIMISKLIVQLTIIFLSIIIL*

>peptide 12 (37 aa)
MSHMVIFFFFFSLPSVIPILVITRCYTLCYNGQIKKT*

Sequence

>CNT0001755
GTTAGATTAATCTTTATTAATATAACTTTTAACGAACAGAAATTAAATGGTCGGGTCATCATCTTTCCTAGTTTATTTTAATTTTAAATACTACTTACTA
TAGCTTATCATATAATAGCGGATGGATATTTTGATTACCAATGTGAGTTGCCTTCCCTATTAAGGCTTTGTTCGGCCATTGTATGGTATGGTTGTGAGCC
ACTGTCTTAGAAGGCCAAGGGTATTCAGAGCACCTAATCTTATAAATCTGAGATTCAGAAGAACAGTTTATAGGTTCTTACTGAGTTCCTATACCATTTG
CAGCTTTTAAATCCTGAATGTAAATCCTCAAAGCAACTGAAAGCTTTAGTTTGCAAGATTGAAGTGAAGACACAGTGAATATGTGGCTGTGTGCTACCAA
AAGATGATGATCTTGTTATATATTGCATTGGTGAGAGAAGTGAAGTCGGAATGCTTGATACAGGAAAAATACAGTGGAAAAGCATTCACAAGCATTATAA
TACTTATCTATTTTGGAAATCTTTCCAAGTTACAATGATTCCCACTAATCATAACTCGTAAGATCTTGTGTAATTAAAATGGAAATAGGAGACATTTTTT
CAAATCAAACTCCCCCTTGTGTATCTGTATTGTATTTATGATCTTGTGTGCTGAAAAAACGCTTTTGCAAAATAGAAGTCTTTGTTTTGAACTTCCTGAG
TTTTGGTAGTTTGATGATTTATTCATTGGAAGAAAATGTTCAGCTGATTTGATAAAGGAAATGTAATTGTATGAGTAAACCCTCAAATTAGTCCTTAAGA
TTGTATCCATCAATCACTTTAGTCCCTTTTGTTCCTTTTTAAAATTTACTCCCAACTTTTGTAAAAGGGCACTCTCCTTAGTCTTTAGTCCTTTTCTATC
TCATTTTTGACTGACATTAAGGATTACAATGAATGACTACAAAGTCGGACTAAATAAGAATCTTAAAAAGTCAGACTAAAGTGACTAACTCCAAAAACTA
ATTTAGGGGTTTACCCATACTTGTACAGATGCATATCAAAGACTAGTTTTCTTCTTGCTTGCAGAAATCAATTCCCAATAAGGTACACTTCATAAACACC
CTTTTTCTTGGCTTATACTCATTGTATTATAATATAATATTCATGATCACACAGGGTGACTTCTTAGTACATTTAATGGATATTGCATGAGATGAACTGA
CTAAAAAGCATGATGAAGTTTCAGTTGAGAAGCTGCAGGTATAGTAATGAAATATCCTTCAATTTACCCTAAATATTATTTTCTCCTAGTAAATTTAATT
TTTCAATTTCCTATTTTAATTTTGACAGGGACCTATATTCTAGTTATGTGGTTTTCCTTTTCTATTTTCTTGTTTTCCTCTTTGTTGTTTACTCTCTTCT
AGACCTTGCATTACCACAACCTGTTTTGTGATAAGTAACCAATTCAGCTTGTAAGAAACTCTCAGAGTTGTAAACTTCAGTATTCACACATGATGCGAAC
ATTTCACTTTCAAGAAAGATCTTCTCTACTTAGAAGGTTGGACACATTTAATGATCTTGAAGTTACTCTGAGAAATTCTGGTGACAATCATTTGGAGGAG
CCTATTAGCATCACTAGCCTTGAAACATTTTCACTAAGTTACAATGTCTTTTCTTCTCCATAAGTTTTTGAGAGTGTCTTGCATTTGCATCGTTAATGCT
CTATTTTTGGTTCTGGTTTCAGGTGCACTGGCCACTGTCTATAGTGTTATCACCATATAATGGTCAGGTGGTCTTAGATGCACCATTACACATCAAATGT
CCACAAAATTGTCAAATTTTATGCGTTAATCCACTTGTTGTTTCTACAAGTTCAAGTGCTCATTTAACTTAGTGCTAGAAATGTGAGGTTATTATTGTTT
AGTAGCTCTAGCAGGTGTGATCTTGTTTGATAACAAAGCTCCAAAAATATAATTTATCTGTGTGCATTTGGTAAGATATAATGTACATATATGTGTCAGA
AACTAATTGTATCATAAATTTATATACTAGGCTTCATCCTGTGGTGATTCCTCTGTTTGCTTCATTCAAGAGTAGATCCTCTTGTGATGTTGTCTTGTAC
TGTCAGCATTGCATTAATGATAGCTCGCACAATCATAGTAGGATAAAGCTTTCCATACCATGCGTTGTCAATGAGAAGGGAAATATTAGTCTACTACTAG
GTCAGGAATTGGTACTGGATCTACTGGTTTCACCCCCACCTTATTTGGCACCCTTCACAATTGGACCAATAGTTCTGAAGGGTGTAAACTATGCCTCTGG
TGGAGGTGGAATCTTTGTGACCATCATGATATCGAAACTCATAGTTCAGCTCACTATAATATTTCTCAGCATTATAATTTTATAAAGTCCTTTGTTTTGT
TTATAAATATTTCTCCTACAAATTTTGGTGTTATGGTTACTAACTTACTATTATATTAACATTCAACCACATGCAGAGGTTATTCAACCTCATAGTTAGA
AAATTTGTTGTGGCAAATGTGGGGCCTACTGGGTGTATACCAAGCCAGAAGGACATCAATAATGCAGTTCTTATTACCAATTCCTGCAATTCTCTTAGTG
TTACCAACCTGAACATGATTAATAGTCCAAAATCTCACATACACGTAAATGGTTTTGAAGGAAATATATTCTATAAAACTTTATGGAGATCCTAAGCTTG
GGAAGGAAAGCCTGAAAACCAAAACCATGCCATAGTTTTCACTCGTGGTGAAGCTGTTCAAATTATTGACATGAATCAGGTGAAGATATGTCTCATATGG
TCATTTTTTTTTTCTTTTTCTCTTTGCCATCTGTAATACCTATTTTGGTTATTACAAGGTGTTATACATTGTGCTACAATGGACAAATTAAAAAGACTTA
AGGAAAAGGAAGG