Detailed information on CNT0001768 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LUD7|CALS8_ARATH, E-value = 3e-06

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001768

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.6122.0532.7970.4661.0683.5123.2983.0463.0295.473.4074.6142.7420.5851.242leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.56

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MWGLLGVYQARRTSIMQFLLPIPAILLVLPT*

>peptide 2 (35 aa)
MKALQVISSDKQLFLKQDPNSHLLKYIQELEKNAV*

>peptide 3 (38 aa)
MHEFRLETPHMPPKLLNPECKSSKQLKALVCKIEVKTQ*

>peptide 4 (75 aa)
MAKRSQRFPVNYEKDQSGCMWGFISIFDFRHACFTRKLIVDRTHGNKHVVGAALIKNKFEVLSNLDKNMKAILLD*

>peptide 5 (44 aa)
MMILLYIALVREVKSECLIQEKYSGKAFTSIIILIYFGNLSKLQ*

>peptide 6 (80 aa)
SYTIFISALTSLKIYLSTFLFPSSPSTSNRDSDEFLQSAAICQSSSRVTTTSSSRAAVRCQRSFRFRRSLFWFWSSLDIQ*

>peptide 7 (127 aa)
MMKFQLRSCRLHPVVIPLFASFKSRSSCDVVLYCQHCINDSSHNHSRIKLSIPCVVNEKGNISLLLGQELVLDLLVSPPPYLAPFTIGPIVLKGVNYASG
GGGIFVTIMISKLIVQLTIIFLSIIIL*

>peptide 8 (55 aa)
MSKLLQSDNDELLQSSSEMSTLLQISAFPLLVLEFPRHPITKFPASVRGCARLQL*

>peptide 9 (57 aa)
MLDTGKIQWKSIHKHYNTYLFWKSFQVTMIPTNHNSCISKTSFLLACRNQFPIRVTS*

>peptide 10 (37 aa)
MSHMVIFFFFFSLPSVIPILVITRCYTLCYNGQIKKT*

>peptide 11 (74 aa)
MQRLFNLIVRKFVVANVGPTGCIPSQKDINNAVLITNSCNSLSVTNLNMINSPKSHIHVNGFEGNIFYKTLWRS*

>peptide 12 (29 aa)
LIHHFYFCLNLTQNISFHFSVSVFSFHEQ*

>peptide 13 (30 aa)
MLYMFIYDMVFSSMYSRFPKFRISDLLVIQ*

>peptide 14 (79 aa)
MVNKVVVNLWFLSSAFIYFQKLRLFFIELWHIWYIDLENRDNTKGGQLIILLCLVCQHSKQLVLLVLVHCKCPFYFLSI*

Sequence

>CNT0001768
TCTCATACACCATTTTTATTTCTGCCTTAACCTCACTCAAAATATATCTTTCCACTTTTCTGTTTCCGTCTTCTCCTTCCACGAGCAATAGGGACAGCGA
CGAGTTCCTCCAGAGCGCAGCGATATGTCAAAGCTCCTCCAGAGTGACAACGACGAGCTCCTCCAGAGCAGCAGTGAGATGTCAACGCTCCTTCAGATTT
CGGCGTTCCCTCTTCTGGTTCTGGAGTTCCCTCGACATCCAATAACAAAGTTTCCGGCGTCTGTTCGAGGTTGTGCAAGATTACAGCTGTGAAGAGTTTG
TATGAACATAGGCAACATAAGGTTCATATTACCTTATTAGCATCCCTAGAAAAGGGAAATAAGGAAAAACGGAAGTGAACTGCACCAACCGATCATTATG
GCAAAGAGGTCCCAAAGATTCCCTGTGAATTATGAGAAAGACCAGTCAGGATGTATGTGGGGTTTTATTAGTATATTTGACTTTCGTCATGCCTGCTTTA
CTCGAAAGTTGATCGTGGATAGGACGCATGGCAACAAGCATGTTGTTGGTGCTGCACTTATCAAGAACAAGTTTGAAGTGTTGAGCAATTTGGATAAGAA
TATGAAGGCAATTTTGTTAGATTGAATGGGAAAGATCTGCCTGAAGATGGACAATTCCTGAGCTCACGTGAACTCATGAAAGCACTTCAGGTTATAAGTT
CAGATAAGCAATTGTTTCTTAAACAAGACCCAAATTCACACTTATTGAAATACATTCAGGAGTTGGAAAAGAATGCAGTTTAGTTGTCAGAGGTGGCAAA
GAGTGCACATATGGTAAATAAAGTTGTGGTAAATCTTTGGTTCCTTTCATCTGCTTTCATTTATTTCCAAAAGTTAAGATTGTTTTTTATAGAATTGTGG
CACATATGGTATATTGATTTGGAAAATAGGGACAACACCAAAGGGGGACAACTAATAATATTGCTATGTCTGGTATGTCAGCATTCAAAACAATTGGTCT
TGCTAGTGTTGGTGCATTGTAAGTGTCCATTTTATTTCTTAAGCATTTGAAATTTATCCATTGTATACGATTAATTATATAGATAAATCTTAATTAACTT
GCATCTGAAAATTCATGCTATATATGTTCATATATGACATGGTCTTCTCATCCATGTATTCTAGATTTCCAAAATTCAGAATTTCAGACTTATTGGTGAT
TCAATAATATTCATATTTTAGGCATATTTTAGGTTACAAGATCCTGTTCAAGAAACAATGATGTAGTGGAGCCCATGATAAAGCCCCAGTGGTATGTCAA
TTGCAATGATTTGGCAAAACAAAATCTAGTAATTGATCGTTAGCATCATTATACTGTGTATGTAATTATTAATAATATTTTCCCTCGTTAAATATAAGAA
AAGCTATTTTTAATGCATGAAAGGACATACATCATGATCTTTCTTGCGTAGATTATTTAGTCCTCTTTTCATGCATGAGTTCCGCTTGGAGACCCCACAT
ATGCCTCCAAAGCTTTTAAATCCTGAATGTAAATCCTCAAAGCAACTGAAAGCTTTAGTTTGCAAGATTGAAGTGAAGACACAGTGAATATGTGGCTGTG
TGCTACCAAAAGATGATGATCTTGTTATATATTGCATTGGTGAGAGAAGTGAAGTCGGAATGCTTGATACAGGAAAAATACAGTGGAAAAGCATTCACAA
GCATTATAATACTTATCTATTTTGGAAATCTTTCCAAGTTACAATGATTCCCACTAATCATAACTCATGCATATCAAAGACTAGTTTTCTTCTTGCTTGC
AGAAATCAATTCCCAATAAGGGTGACTTCTTAGTACATTTAATGGATATTGCATGAGATGAACTGACTAAAAAGCATGATGAAGTTTCAGTTGAGAAGCT
GCAGGCTTCATCCTGTGGTGATTCCTCTGTTTGCTTCATTCAAGAGTAGATCCTCTTGTGATGTTGTCTTGTACTGTCAGCATTGCATTAATGATAGCTC
GCACAATCATAGTAGGATAAAGCTTTCCATACCATGCGTTGTCAATGAGAAGGGAAATATTAGTCTACTACTAGGTCAGGAATTGGTACTGGATCTACTG
GTTTCACCCCCACCTTATTTGGCACCCTTCACAATTGGACCAATAGTTCTGAAGGGTGTAAACTATGCCTCTGGTGGAGGTGGAATCTTTGTGACCATCA
TGATATCGAAACTCATAGTTCAGCTCACTATAATATTTCTCAGCATTATAATTTTATAAAGTCCTTTGTTTTGTTTATAAATATTTCTCCTACAAATTTT
GGTGTTATGGTTACTAACTTACTATTATATTAACATTCAACCACATGCAGAGGTTATTCAACCTCATAGTTAGAAAATTTGTTGTGGCAAATGTGGGGCC
TACTGGGTGTATACCAAGCCAGAAGGACATCAATAATGCAGTTCTTATTACCAATTCCTGCAATTCTCTTAGTGTTACCAACCTGAACATGATTAATAGT
CCAAAATCTCACATACACGTAAATGGTTTTGAAGGAAATATATTCTATAAAACTTTATGGAGATCCTAAGCTTGGGAAGGAAAGCCTGAAAACCAAAACC
ATGCCATAGTTTTCACTCGTGGTGAAGCTGTTCAAATTATTGACATGAATCAGGTGAAGATATGTCTCATATGGTCATTTTTTTTTTCTTTTTCTCTTTG
CCATCTGTAATACCTATTTTGGTTATTACAAGGTGTTATACATTGTGCTACAATGGACAAATTAAAAAGACTTAAGGAAAAGGAAGG