Detailed information on CNT0001769 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LNG5|PPP7L_ARATH, E-value = 2e-17

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001769

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.0482.8312.3791.2440.4340.750.80.92.0621.561.6972.5951.1890.9371.767leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.83

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MQVFDGGSGRASISTWRTKKGTVQNQHKVRPLELLIPRKELKLCL*

>peptide 2 (59 aa)
MALIFTFPHRRLNNFPICTLLIVAFLLSPPKVLTFPICTLLNVQIIRSSSDYLKKFKFE*

>peptide 3 (70 aa)
MESPVPLAISSCIRSSQSNWQVPSTARCSWGVGGGQGCSATGGAGAGRTRQSYWRFAEREDSPVQLTSCF*

>peptide 4 (41 aa)
MAKTGNLSPSFFSLSPPSWLLAAGSRLFATRPERCCTVFHV*

>peptide 5 (35 aa)
MGTFRACFVYKEMCIATDYKTKSIEGMCILIQMWI*

>peptide 6 (66 aa)
MKRYKFLWKPYTATVMSLLPSICLVGSVAWWRWYHSFVFMLSDTNPIECCDNLECNNLFLRVLRNH*

>peptide 7 (36 aa)
MQTQLHWYLFVFEYHIDMSASEHSFGGIAKTHSHFS*

>peptide 8 (53 aa)
MASRCRFTIVRNSARTMLYRIPRVRQHSMIAFPEMVLEESGAAKIESDTKLFI*

>peptide 9 (69 aa)
MRFNGKTLKIEFVGTCSATPVVAPLCQTNLMGRPNDVHLSLCKYLMVALVEHLFQLGEQKKELSRINIK*

>peptide 10 (92 aa)
LIEDRGISGVLKKQTKLFPQVSQTQRSNGKVAKRQSGCSMIQNGFDFHFSSSETQQFSDLHSIDCSISLITTKSPNFSDMHSIERANHSIFI*

>peptide 11 (90 aa)
MQQSIPEGPPQPLNIHGIMLKGKPDENWGQLLAPLISQWNNRAEFRVDVYPRQKGLLSFNFDYMVWYKQKMKMFVDLKNANTITLVFICF*

Sequence

>CNT0001769
TTTTGATTGAAGATCGTGGAATTTCAGGGGTTCTTAAAAAACAAACAAAACTCTTCCCCCAAGTTTCCCAAACTCAGAGAAGCAATGGCAAAGTGGCAAA
GCGGCAAAGCGGTTGTTCTATGATTCAAAATGGCTTTGATTTTCACTTTTCCTCATCGGAGACTCAACAATTTTCCGATCTGCACTCTATTGATTGTAGC
ATTTCTCTTATCACCACCAAAAGTCCTAACTTTTCCGATATGCACTCTATTGAACGTGCAAATCATTCGATCTTCATCTGACTATTTAAAGAAGTTTAAG
TTTGAGTGAGTGTGTGGGATGGCAAAAACAGGGAATCTGAGTCCCTCTTTCTTCTCCCTCTCACCACCGTCATGGCTTCTCGCTGCCGGTTCACGATTGT
TCGCAACTCGGCCAGAACGATGTTGTACCGTATTCCACGTGTAAGGCAACATAGCATGATTGCATTTCCGGAAATGGTTTTGGAGGAGTCAGGTGCAGCC
AAGATTGAAAGTGACACCAAACTCTTTATTTAACTTGGATCATGGAGTTGCCGACGATGATATCAAGATTGGGAGATCAAAGGGAACAACAGAAGTTGTG
TTCGTGAGGCACTATGATGCTTTAGCAGCCATCAAGAAATACAACAATGAGGTTTAATGGAAAGACATTGAAAATTGAGTTTGTTGGAACATGTTCCGCT
ACTCCGGTTGTCGCACCTCTTTGTCAAACTAACTTAATGGGAAGACCAAATGATGTCCATTTAAGTTTATGCAAGTATTTGATGGTGGCTCTGGTAGAGC
ATCTATTTCAACTTGGAGAACAAAAAAAGGAACTGTCCAGAATCAACATAAAGTGAGGCCTTTGGAGCTTCTGATTCCAAGAAAGGAACTAAAACTATGT
TTGTAGACCTTGGGTACCACAGATAAACGTCCTTAAGGGAATGTATTGCTAAAGCAAACTGCCAGTTCCATTGACGAGTTTGTTGTGTTCGTACATGTGG
CATGGAGTCGCCAGTCCCATTGGCGATTTCGTCATGCATTAGGAGTAGTCAGTCAAACTGGCAAGTTCCAAGCACAGCTAGGTGCAGCTGGGGCGTAGGG
GGAGGTCAAGGATGTAGTGCAACAGGCGGAGCAGGTGCAGGAAGGACTCGCCAGTCCTATTGGCGGTTTGCGGAGAGAGAGGACTCGCCAGTCCAACTAA
CGAGTTGCTTTTAAAAAAAATTCTCCCATTATAAAAGCTTGATCACTCCACAACTGCTCCCTTCCTTGCACTACATTGCTTTCTTCTTCTTCCTACTACG
TGCTTTCTCTTCTTGGACATTGCTTCCTTCCTTTTCTTACTACGTGGTTTCTCTCTTCTTGATAAGTGTTTCTTAACTGGACGTATGCATGGGGACATTT
CGTGCTTGTTTTGTATATAAAGAGATGTGCATCGCCACCGATTACAAAACTAAATCAATCGAAGGTATGTGCATCTTAATCCAAATGTGGATATGAGAAC
GATGCACGACTTTGGCTCCAAAGAGGACTCCTCTCGTAATAGAAAATAAATCACTCGGACACAGGTGGTTGCGACGTGAAAATCAACATATTGACAATGA
TGATCTGATAGTTTTTCGTCACAAATTGGATATCATGAAACGATATAAGTTTCTGTGGAAGCCTTACACAGCAACTGTTATGTCACTGTTGCCTTCAATT
TGTTTGGTTGGAAGTGTAGCGTGGTGGCGGTGGTACCACTCATTTGTTTTCATGTTGAGTGACACCAATCCGATAGAGTGTTGCGACAATTTGGAATGCA
ACAATCTATTCCTGAGGGTCCTCCGCAACCACTGAATATCCATGGCATAATGCTAAAAGGCAAACCAGATGAAAATTGGGGACAACTGTTGGCCCCACTG
ATCAGTCAATGGAACAATCGAGCTGAGTTCAGGGTCGACGTTTATCCTCGACAAAAGGGTTTATTGAGTTTTAACTTCGACTACATGGTCTGGTATAAGC
AAAAAATGAAGATGTTTGTTGACCTGAAGAATGCAAACACAATTACATTGGTATTTATTTGTTTTTGAATATCACATTGATATGTCTGCAAGCGAACATT
CATTTGGTGGTATTGCGAAAACACATTCTCATTTTTCATGACCGACTATGACTCTTTCACAGTAACATGATGTTCCAATTGCAACACCTAATGCCCCATT
AGGTCCGCAATGACATGTATCCGGAGCAATACCTGATATGTGTGACTTATTAGATGTTGATTTGCGTCACGAGTTTTCTGTTGAGACTGAGTAAGTAGAA
GCAAGGAGATATCGCGGCAGAAGAAATCCTGATCGTCAAGCGCGAAGATAGGATTGACCATGTGACACTTCCTCACGTCATCACAAACATCATAATGAAT
GATATTCATGTCTCTGTTTAAATTTGTTGTTGTATGTTTGTCATTTGAATTTGACACTTAATCTATCGTATCTCATTTATTAAGGCTTACTAATGGATAA
AGTTTAAAAAAAAATTGAAGTAGATAAACGAAAATAACTGATGGTACTAACTAACGATGAACACCAATGTCATATGTGCACTATGATCCAGATACTTCAT
TGGACTCCTCA