Detailed information on CNT0001770 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P92946|SUT22_ARATH, E-value = 4e-15

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001770

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)4.3935.0355.5313.4311.0471.5030.8820.9651.9984.7932.542.922.279.0388.526leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.588.599.5

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MSRAVYSNSDVYIFDDPLSALDAHVARQCLMPLLDL*

>peptide 2 (43 aa)
MLCGNWFFLKDCSEFQCWMSNISIKYCDGRYSVCLPGIVAIRS*

>peptide 3 (64 aa)
MQPRKLVLLNLTNCCIVYMLGTQILKPGFTIIADHEMKCLLLFIRGTHSIKDTLTAVTGNVIAD*

>peptide 4 (92 aa)
DPSNCVDLINTKRCETQKEKKKIIEKYFKKFMIYSLTQPIQKLVGISTKHNNIRTLLVLHAAKEVSFTEPNKLLYRIYARHTDFETRFYNNS*

Sequence

>CNT0001770
TGATCCTTCCAACTGTGTTGACTTAATCAATACAAAAAGATGCGAGACACAAAAAGAAAAGAAGAAAATAATTGAAAAGTACTTCAAGAAGTTCATGATT
TACTCTTTAACCCAACCAATCCAGAAGCTAGTAGGAATTTCAACAAAGCACAACAACATCAGGACCCTACTGGTCTTGCATGCAGCCAAGGAAGTTAGTT
TTACTGAACCTAACAAATTGCTGTATCGTATATATGCTAGGCACACAGATTTTGAAACCAGGTTTTACAATAATAGCTGATCACGAGATGAAATGCCTTT
TGTTATTCATTCGTGGCACACATAGTATCAAGGATACTCTAACAGCTGTTACAGGAAATGTGATAGCAGACTGAAGCTGGTGGCAGGATCTGCTGAAGGA
TATTCTGGACATGTTGATGGAAGGTTTAGGGAGGCAAGGATGAATCACCCCAAAGGGATAACGGAAAAATAAATTCCAATGGTGGCTCTGATTTTTTGGG
CATGCCGCAGTTTAAAGCTCAAGAGGCTGTAGCAAAAGCATTACAGAGGAAGTGAACCAATTCTTCACAATTCTGATGTCTAGAGCTGTCTACTCCAATT
CTGATGTGTACATCTTTGATGATCCCCTAAGTGCTCTGGATGCGCATGTGGCTAGACAGTGTTTGATGCCATTGCTGGATCTTTGAGTTCATGCTATGTG
GCAACTGGTTCTTTCTCAAGGACTGCAGTGAATTTCAGTGCTGGATGTCAAACATCAGTATCAAATATTGTGATGGTCGTTACAGTGTTTGTCTCCCTGG
AATTGTAGCTATTAGATCATAACTATATGTATAGCTTCTTTGTGTCAATGATACAAATTGGAAATATTTAATTATATGTTTTTTTTTACTATACTGCTAC
CTATTAAAGCATAAGCTAACTTATTTTAATGACGTGCTTATTCAATT