Detailed information on CNT0001772 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P92946|SUT22_ARATH, E-value = 3e-14

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001772

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)5.2464.2093.7180.7782.122.3431.6672.5792.87410.4465.3795.9584.5025.3664.142leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01234567891011

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MKCLLLFIRGTHSIKDTLTAVTGNVTEAGGRIC*

>peptide 2 (43 aa)
MLCGNWFFLKDCSEFQCWMSNISIKYCDGRYSVCLPGIVAIRS*

>peptide 3 (36 aa)
MSRAVYSNSDVYIFDDPLSALDAHVARQCLMPLLDL*

>peptide 4 (44 aa)
MIINQVKPLQITCCMIKCLLLGQQILHMRSQAYNSAINFLCIRD*

Sequence

>CNT0001772
CTTTCAGTTCAATAAACTTTAAAACTCTTGAGCCTAGGGATACAAATATATTGTATGCTTCCATGTGAATTTTCTTCTCTTAATGCTTATGAGTTATGAC
TAATCTTGCTCACTTAAGGGATTATTATATTGTTCACAGTAGGGGAAAAAGGATTTATCATCTAAGGAATTAGGGTTAAATTAATTAAATTAAAGAAATT
GGTTAGCAATTGCATAAAACATGGATTTAATGTTACTTATAATTAGTTCCTTTCCATTGCTGGTTTAATATAATATGACTTGCTGGAAATGATCATAAAT
CAAGTAAAACCTCTGCAGATAACATGCTGTATGATAAAATGTCTTTTACTTGGACAGCAGATTCTTCATATGAGATCACAAGCATATAACTCTGCTATCA
ATTTTCTTTGCATAAGAGATTGATTATTACGGAAAAGTTTGGAGCTTGTTCTATGAATTATTTGAGAATTCCTTGGGCTAATTCTTTGTAGGGAGACCAG
TGTTCTAAAATTTCATCTAGTTTTGTTATTTTTACTTTCATTGTGCATCATACATAAAATGGTATGTTGGTACTTTGATGTCACAAGTGTTTATTATTTT
TATGATATTGGCGTAGCTTAGTTTTCTTTGGTGTGTCACAGCTGCAGTCATTTCTTTTGTAGAAATCAACTGTTTAGTAACTTGAAAAGTCTCAACCACA
CAAAAAAGTACAGCAGAAGAAAGTACTAGAATTTATTAAGTTACTGAATTATTAAGTTACTTGGTACTTGTGGATTACCTCTTAGTGCATAGCCCCTTTT
TACGTTTATTAAGTTTCTGAATTATTAAGTTAATGTTAGTCCCCATTTTTGTTTTTTCATTATTAAGGAACTCTTGCCCTCATATTCCCTAGTAGTTTTC
TTATCTTCATTTTAATGAATTTATATATTGAAGGACCTTCTCATTTAAAAACTCTTGTAATTAACTTCTTGTTGTACAGATTTTGAAACCAGGTTTTACA
ATAATAGCTGATCACGAGATGAAATGCCTTTTGTTATTCATTCGTGGCACACATAGTATCAAGGATACTCTAACAGCTGTTACAGGAAATGTGACTGAAG
CTGGTGGCAGGATCTGCTGAAGGATATTCTGGACATGTTGATGGAAGGTTTAGGGAGGCAAGGATGAATCACCCCAAAGGGATAACGGAAAAATAAATTC
CAATGGTGGCTCTGATTTTTTGGGCATGCCGCAGTTTAAAGCTCAAGAGGCTGTAGCAAAAGCATTACAGAGGAAGTGAACCAATTCTTCACAATTCTGA
TGTCTAGAGCTGTCTACTCCAATTCTGATGTGTACATCTTTGATGATCCCCTAAGTGCTCTGGATGCGCATGTGGCTAGACAGTGTTTGATGCCATTGCT
GGATCTTTGAGTTCATGCTATGTGGCAACTGGTTCTTTCTCAAGGACTGCAGTGAATTTCAGTGCTGGATGTCAAACATCAGTATCAAATATTGTGATGG
TCGTTACAGTGTTTGTCTCCCTGGAATTGTAGCTATTAGATCATAACTATATGTATAGCTTCTTTGTGTCAATGATACAAATTGGAAATATTTAATTATA
TGTTTTTTTTTACTATACTGCTACCTATTAAAGCATAAGCTAACTTATTTTAATGACGTGCTTATTCAATT