Detailed information on CNT0001777 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001777

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.4274.4782.8821.1531.2570.6320.7410.9663.964.5093.5573.7633.7443.3752.875leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.54.75

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVINAILTFGQISIVTGRIWWLHDNVWYGDIIKLD*

>peptide 2 (58 aa)
MLLLERVLTRALQSFLETMKVKLWQLQQSFIRVAEALALRCCIEDLLSLLSESSLDIS*

>peptide 3 (30 aa)
MNHMVFKQKKILVEQIMQQVHHLIKCYKEE*

>peptide 4 (93 aa)
MVGRMKMRRIYLIVACIYVGIKREWWIGRGNCSVPIYRVHYCYVLHFTPFFLSSVHKQGKRGNHLIKLLQYPHHGNQLVKREAQQIIVADSAI*

>peptide 5 (67 aa)
MVRWLINRELLLALTIPQNSKINILSKNITASCFRSTKGSANFCAQKGINRLNSKSTHHACSLVCHH*

>peptide 6 (37 aa)
MHEPYSFKSSVDISRNAFPGNQNVVVPPTLANSGSLC*

Sequence

>CNT0001777
GTTTAACCTTGACATTAAAGTTTCTATTTTGATACCTTACATTTTCTAGTGTGCTGCTACTCTTTTTATGGTAGGATTGTTGGAAAAAAAATTCATGAGT
CTGCACTTGAAAGTTATGATATCATGTGAATAAGATCAGATAGTGTATCAGAGGGATTTTGGAATTTGGATATTGTTCTCATTCTAAAAATATATTCATT
TTGATCCATAGTCTGGCATCTTCTTACTGTTTTAAACTAATTTGTAAATTTAGAATTCTACCTGATTTTTTTCTGGTTGAAAAAGAAGAAAGGGAACAAG
CAAGCAAAATAAATTATAGATCGGAATAAAACATAGATGCCAAGAGCATGAAATCAAAAGGATGTGAAGAGACATTAATGAGATGAAAACTGAGAAGTAT
AAAATAGTACTATGGGCGTTGAAGACAATCAAATTTTTTTCTTTTCTTAAAATATAAAAATGAGTCTTTTTTTCTTCTATTCATACCAGGTCAATTATGG
GAACTTCATGCATGGGCTGATGAGGGAGTATATCCAACTTTAACTGAAAGTTTCTGTCTGAGTGAGTTATCTATGCATGAACCCTATAGCTTTAAGTCTT
CAGTAGATATATCACGAAATGCATTTCCAGGAAACCAAAATGTGGTGGTTCCTCCTACTTTAGCAAACAGTGGTAGTTTATGTTAGAATCGTTAATCTAT
CTTTGACAGTTTCGAGTGTACTGCACTGTATTACAATCAATTTTGTATGCTTGAAATTCGCAAATTCATTGTATACTTTTTAACTGCATGATTTTTCTCC
TCCATTACCATTTCAATTACTCTGGTGTCAGAATTATGGTACAATCCAATAAACCTTGATTCCAAATACTGGTTGTTTTTATGGACCATTTACTGCCATT
AGTCTCTATAAAAAATTAAAAGATTACATCAGTTATCCTAGGTTAGCAACAATCACTATTAATTAATTATTCAAACTAATTAAAAATTTAAATTTATAGG
GTAGAATTGTGAAGGCACCACAGTAAAATTTATTTTAAATGACATGCTTCTTTTATAGTACTAAATGGAGTTTCTCCGGTGCTTTCATTAAGGTAAATGT
GGTAAATTGGTAATCATTCACTGTGTAGAAGACAATTGCAAGTCTCTTTGTAGAAAAGGAATCGTGTGATCATTCTTTGAGCAGCTATCTCATATGGTTT
TCATATTTGGTGGGATTTGTACTTTTGTAGACAACCCAAATCCAAATGAAAATATTTATTAAATTAAAGAAAACAAGGGTTGGGAACTAGATAGTCAGAA
GACACGTCTATAATATAAGATCACACGCATAGATTACATAATGTCCGTGCATCACATAGGTTGGACACTAGATAATTCATATTTCACGTAAAGATTAAGT
ATGATATGTTAGTTTAATTTATAGTTCCAGCTAATTTCATGTAAAGATTTAATTCATGATGTTAGTTCTTTATAGGTTTATTTGTATTTATGTATTTTGC
AAGGTATATCACCTATGAAGTTCTTCATGAGCATCATCTTCATCAAGTGATATGGGTCTTTGATCACAGATAAAAAGAACAGAATGTCCTTCTGGCATCA
CCAACAGGGTAGATGGCAAGCAAGAAATAGCCGAGTTGCAGGAAACAAGGATATATACTAGGGAACATTTGGCAAGTTTTTAGCTTCTACCTTGCTATCT
TGCTGTTCATAGCCAAGCGGGATAAATATAATAATGCAAAAGAATGTGCCCTTGGTGTGGACTGCAAACTGAGACTACAACACATACTGTTCCGATGTGT
GATGAGGTTTGAAGACTATGGTTTGCATCACAATCAATGAACCATATGGTATTCAAGCAAAAGAAAATATTAGTTGAGCAGATTATGCAGCAGGTGCATC
ACCTCATTAAGTGCTACAAGGAGGAATGAAAGATGGCAGAAGCCATTGACAGGCCAAATTAAAGCAAACTTTGATGCTGCTGTTAGAAAGGGTGTTGACA
CGGGCATTGCAGTCATTTTTAGAGACCATGAAGGTGAAACTTTGGCAGCTGCAACAAAGTTTCATCAGAGTGGCAGAAGCTCTGGCCTTAAGATGTTGTA
TTGAAGATCTTTTGTCTTTGTTGTCTGAATCTAGCTTGGATATAAGCTAGATAACCTCCGCTAAGAGAATGGGTTTCATCATTTGACTACTCATTTAATC
AACTGTCTGTGAGTTCAGGCTTATGCCTTCAGTAAGTGCAGTTCGAAGCCTGTGGGGAAGAGTACACAACAAACCTAGAGGCATGTTCGTTTATATTGGC
AGGAGCTGAGAGCGTTAAAATTAGGATGGGGGCGATTACATGTGATGAGATGGGTGAAGATTATGTCTCTGTCTCTCTGAAGATGCATGGGAATTTTATG
CAAGGTTGAATTTAACTGATGACTCATGCGAATCAGAGTGGCTGTATACTTTGTGGCGCAGGGTAATTAATACGGGAAAGGGGAATGGTAATTAATGCTA
TATTAACTTTTGGTCAAATTAGCATTGTTACAGGTCGAATATGGTGGTTACACGATAATGTATGGTATGGGGATATAATTAAACTAGATTGAAGGGTAGA
ATAGTTTGCTTTAGTTTTGATGGTTCGGTGGTTAATTAATAGGGAGTTGCTATTGGCTCTTACAATCCCTCAAAATTCCAAGATTAACATCCTCTCGAAA
AACATTACGGCATCGTGTTTCCGCAGCACAAAAGGGAGTGCCAATTTTTGTGCACAAAAGGGAATCAACCGGCTCAACTCCAAGTCCACCCACCACGCTT
GCTCCCTCGTCTGCCACCATTGATTCCACCTTGAGTGCTGAACCCAAACCACCCTCGAAATTGGTGCCACCCACCACTTCCTCAACGGTCTCCCCACCCA
ATCACCGACGAGCTTGTCTGTGGAGAGATATACGATGCGACTAATTAGAATTTATATTATAGGGATTGGATTTGGATGGTTGGGCGCATGAAAATGAGGA
GAATTTATTTGATCGTGGCATGCATATATGTGGGAATAAAAAGAGAATGGTGGATTGGAAGGGGTAACTGCAGTGTACCTATCTATCGTGTTCACTATTG
TTATGTGCTTCATTTTACTCCATTCTTCTTGAGCTCTGTACACAAACAAGGGAAAAGAGGGAATCACCTGATAAAATTGTTGCAATATCCCCACCATGGC
AACCAACTTGTGAAGAGAGAGGCTCAACAAATTATTGTTGCAGACTCTGCTATTTAGTTTCTGTTTTAGTTAATTATTGTAATCTTGATAAAATCTCATA
GTTGTTGAGATTTTTAGCAAATTTCAAGTTGTTTGTAAATTGATTCTCATTTATGGAATATATTGCCTTTTGTTTTCAATT