Detailed information on CNT0001786 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001786

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)000.09000003.7484.9673.8194.4774.65700leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.54.7555.…5.25

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MRSSIAFPSLTLMKTVTLPILLSLSPPPSAASLITHLLFSSTDFCF*

>peptide 2 (29 aa)
MYILIHNMCMYNQRVKNKDTVFYYCERCS*

>peptide 3 (34 aa)
MRTPPSIPLFFFIYLSISLQYLNSTGRSDFMCVR*

>peptide 4 (65 aa)
MNFPYRCFYFFWKTVLCQICMCGYEIFNRFPFSDSNEDSDTSHPSLSLSPSLCCFFNNAPSLLFH*

>peptide 5 (70 aa)
MTLLYHKGGRNKKEKRSTPASQYPSHYHMFAKKSPAKEIPLLGKDKDEFSLPLFLFLLENSALPDLYVWL*

Sequence

>CNT0001786
CAGTTGAGTGAATCGATTACTGGCGCAAAAGATGAGAGAGAATGAGTTAAAGGGGCAATGAGAACCCCACCTTCAATCCCACTCTTCTTTTTTATTTATT
TATCTATTTCTTTACAGTACTTAAACAGTACAGGTAGGTCGGATTTTATGTGTGTGAGGTAAGGGTCTGTATCAGTTTTTTCAGGGAGAGAAAGAAAAGA
GGGTGTGAGTGTGTGTATAAGAGAAGAAAGGAGGTTGATGACTTTGTTATATCACAAAGGAGGAAGAAACAAGAAAGAAAAACGCTCAACTCCTGCTTCT
CAATACCCATCTCATTATCATATGTTTGCAAAAAAGTCTCCTGCAAAAGAAATTCCCTTGCTGGGAAAAGATAAAGATGAATTTTCCTTACCGTTGTTTT
TATTTCTTTTGGAAAACAGTGCTTTGCCAGATTTGTATGTGTGGTTATGAGATCTTCAATCGCTTTCCCTTCTCTGACTCTAATGAAGACAGTGACACTT
CCCATCCTTCTCTCTCTCTCTCCCCCTCCCTCTGCTGCTTCTTTAATAACGCACCTTCTCTTCTCTTCCACTGATTTCTGCTTCTGACCCTTCAACTCTC
TTCTACTTTTCCATTTCTCTAAGTTTTTCACTCTTAATTTTTCTCTCTTTGATTTAGCTTGTTACTTTACTTATTTAAGTCGTTGGTTTTCTAATTTGTG
TTTTCATCACCCTTTCTCTGTCATGTTGGTTCTCATTTTCTCATTTCTTTCAGCACAGAGGGAATCATCATGATGGGAATTTTTGAGGATGGTAAAGCTG
TAAGCGGTATTGTAGTTGATTTTTTTTCTTTGCTTGTTATTTGTATTATATTATAAGTTGATCCTTTAATCTTCCTGTTTACGAATATAACATTGCACAC
TTATTCATAAATTAAGGAAGAAGCTCCGGTCTTGGCTTTAATGAGTCCCGTTTTAAGTTGCTCTACCTAGATGTATATACTTATCCATAACATGTGCATG
TATAACCAAAGGGTTAAAAACAAGGACACAGTATTCTATTATTGTGAACGATGTTCATGAGAAATTCTTAAAATATCTCACCTATCATCTTTGTTCTTGG
TTGTTTTAATTCTTAGGGTTAGGGTTCTTTGGTAGAATATTTTTTTGGAAGTCAATTAAAGTTGTAGAATTGACACTGTTTATGAAGAAATATAGTACTT
TCTTTGGCATTTGAGAGTGCAGCAGACTTGTAATCCCTAATTTAGAACATATATACAAATGGAAAGGATATGGATTTTATGCAGAATATAATTCCTTCTC
TAGTGAAATTATATCTGGTCTTACCTTAAAGAATAAGTGATGAAGTTTAACAAGCCAGA