Detailed information on CNT0001789 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LZG0|ADK2_ARATH, E-value = 1e-08

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0001789

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVFGESTLILKHSSSCTNIHFNAFDALRGWK*

>peptide 2 (40 aa)
MISPRIMRFLRRTSTSLFKILSLIVYFSVLLILNDVILYS*

>peptide 3 (48 aa)
MNSGSAYFIMTASTIFFLFVCWKVPLIIQSRLLKYVSTLLVLSNTLNL*

>peptide 4 (66 aa)
LAYMGMGIQVTSRYRSGHSSTIFRIAPVNSTSIPFPQRTNPMRNFLAFAEPIARKRRAMTTTFLVA*

>peptide 5 (39 aa)
MKVCCLSLDHRVLFRFKHYGFNSFTLVFLLCSSLLQEMY*

>peptide 6 (51 aa)
MFFTSSGNVLSFINLQVLMCFFWSSWVYFWDKTWIQLYSFLGAFWYLELEF*

>peptide 7 (52 aa)
MLQVPGATSYMGGIGKDKFGEEMKKNSKLAGVNFTIMKMKLHLLELVLYSWW*

Sequence

>CNT0001789
CTAGCATACATGGGTATGGGTATACAGGTAACTAGTCGATATAGGTCCGGTCATAGCTCTACCATCTTCAGAATCGCTCCGGTCAACTCTACTTCGATCC
CATTCCCTCAAAGGACGAACCCTATGCGGAACTTCTTGGCTTTCGCTGAACCAATTGCAAGAAAGCGAAGGGCAATGACAACAACCTTCCTCGTGGCCTG
ACCAAGGATCTTCGTGCCAAATATGATATCACCTCGAATAATGAGATTCTTGCGGAGGACAAGCACAAGCCTATTTAAGATACTTTCGCTCATTGTTTAC
TTTTCCGTTTTGCTGATACTCAACGATGTCATTTTGTATAGTTGAGATTGATTTGTAGAATTTATGAAGGTTTGTTGTTTATCATTGGATCATCGAGTTT
TATTTCGCTTCAAGCACTACGGTTTTAATTCTTTTACACTGGTTTTTTTACTATGTTCTTCACTTCTTCAGGAAATGTATTGAGTTTCATAAACTTGCAA
GTTTTGATGTGCTTTTTTTGGTCTTCATGGGTTTATTTTTGGGACAAAACTTGGATACAATTATATAGTTTCTTAGGTGCTTTTTGGTATTTAGAATTGG
AGTTTTAACTTGGTAATATGCATAATAAAGGTCTGCATTAAAGATTTACGCTCATTATTGAGGTGAAACTCCAACTCTAATTAAAGAATTGCACCAAAAA
GTACATATGTAATTGTATCTAACTTTTCTCCTTATTTTTATTCTCACTTAATTGCTTTTATGCTCTACACCAGCCCTACTAACTATACATTAATTGTTGA
AGAAATTCTTAGGTTCTAGGTATTTCTTTCACTAGATACCTAGTGTCAGCATGTATATTTTTGGATGCTTGTAAAGTAACAACTCATTGCAATAATGAAA
GGGATATTCGGTCTCCTATTTTGATAAGATTTTAGATCTTTCTTATTCGTTCTTTAATTATGTGATCAGCACAATTGTTTCAGGTATCAAGAATTGGCTA
AAAATTATAATGTGGAGAACATTGTTGGAGGTATTGCATTAGATCCGGAGTATTGGATTTTATATAATTGCTTTAATATTTAAATATCATAAGCAAACTT
TATAAAATGAACAGTGGAAGTGCATATTTCATAATGACAGCTTCTACAATTTTTTTTTTGTTTGTGTGCTGGAAGGTGCCACTCATAATTCAATCAAGGT
TGCTCAAGTATGTATCTACCTTGTTAGTACTTAGTAATACTCTGAATCTATAGTAGCTTTGATCAAATCAATTTACCCTTTACTTTCGCTTCTTGTAGTG
GATGCTCCAAGTTCCTGGTGCAACAAGTTACATGGGTGGCATAGGAAAGGATAAGTTTGGGGAAGAGATGAAGAAGAACTCAAAGCTTGCTGGTGTAAAT
TTCACTATTATGAAGATGAAACTACACCTACTGGAACTTGTGTTGTATAGTTGGTGGTGAAAGGTGGGAACAAAATCTCGATGCATCTTATTTACCACAA
ATGGTTTTTGGGGAAAGCACTTTAATTCTAAAACACTCGAGCAGTTGCACCAACATTCATTTTAATGCATTTGATGCTCTACGTGGCTGGAAATAGGAAG
CATTGCCGCTAGTTGAAGTTCCTGCAGCAGCAACTAAATGGAAATTTAGAAGGTGATAACTATTGGCATGTGCACTTTCATGTTTACGTATAACTCAAAA
TCCTGTTAGTTTTGCTTAGATTCATTTGCTGTCTTTTCTTTCTAGGAAGAAATTTTTACTTGGTGGTTAGTGAAATCCCATAATGCATCTGAATGTAGAT
AAGATAACTAGCATTTAGATTTGAGGGGGCAA

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA14G08050.3 Uncharacterized protein protein coding CNT0001789 97 135 CDS Trans
GLYMA14G08050.5 Uncharacterized protein protein coding CNT0001789 97 135 UTR5 Trans
GLYMA14G08050.6 Uncharacterized protein protein coding CNT0001789 97 135 UTR5 Trans
GLYMA14G08050.7 Uncharacterized protein protein coding CNT0001789 97 135 UTR5 Trans
GLYMA14G10040.1 Uncharacterized protein protein coding CNT0001789 233 144 CDS Cis