Detailed information on CNT0001807 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001807

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.6061.5431.386.3092.5224.6072.7041.9027.0646.7798.3999.6216.95612.53114.398leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)012345678910111213141516

Peptides detected in this lncRNA

>peptide 1 (101 aa)
ILWRLALSNYLMLILSRNREVCRLIPSSSSDHRRFQDFISYLKQRDCAGVIKIPASKSIWARLLFILPHSIETCSLLSIAHDPSDCLIALVLPKETNFDW
I*

>peptide 2 (48 aa)
MLFAFVKFLSDPKKKSLHVGLQSAELFLQLNKLKLLPNCIGQYLSTRF*

>peptide 3 (31 aa)
MIRQIASLLWFFPKKQTLTGYNRCTLSKIKS*

Sequence

>CNT0001807
CATCCTTTGGCGTCTCGCCCTCTCCAACTATCTCATGCTCATTTTGTCAAGAAATAGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAGA
AGGTTTCAGGATTTCATATCATACTTGAAGCAGAGGGATTGTGCTGGGGTTATTAAAATCCCAGCTTCAAAATCCATATGGGCAAGGTTGCTGTTCATTC
TCCCCCACTCAATTGAAACGTGCTCTTTGCTTTCTATTGCACATGATCCGTCAGATTGCCTCATTGCTTTGGTTCTTCCCAAAGAAACAAACTTTGACTG
GATATAATAGGTGTACTTTATCAAAAATAAAATCATAGAGCTAAGCCGGCAGTGGAGCTGAAGGCACATTTTGTATGCCCGGAATATATGTAAATATTTT
ATGCTGTTTGCTTTTGTAAAGTTTCTTTCTGATCCAAAAAAAAAATCCCTCCATGTTGGTCTACAATCTGCCGAACTCTTTCTTCAGCTGAATAAACTCA
AATTACTTCCCAATTGTATCGGTCAATATCTATCTACACGATTCTAAATTTTGATAAATTTTATTCACTTTATCATCTATTAGTGCAAAACGACAGTAGA
GAAATAAAGTACAAAAGA