Detailed information on CNT0001809 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001809

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.9891.1110.730.8650.660.4740.3710.0872.6164.1063.2872.4861.7495.971.316leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.5

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MPFSCLRVTILLSHPLTLCYVAQGINDSTFLLL*

>peptide 2 (33 aa)
GLWPHSTIFNELKKSLHPKGKILDFSFLQNRIK*

>peptide 3 (45 aa)
MTAHSFCFKCQWYISRLNLLRLCVNVSRLVQYANTFTSFKKSIFM*

Sequence

>CNT0001809
GGGTTTATGGCCACACTCTACTATATTTAATGAGTTAAAAAAATCACTCCACCCCAAGGGGAAGATTCTCGATTTCTCATTTCTCCAAAATCGAATTAAG
TGACCTCGGACACGGTGATGGATTCTTCTTCTCACTTCTCAGTAATTTTCCGGTTCTTTTGTTAATTCAGTTCAGTTTTTCCACAATATGTTTGATAATA
TTCCCTCGTTCTTCTGTCAAAGAATTATGCTCTGTTAATTTGCACTTCGAAAGCAAAGAATTAGTGTTCATTTCTGAATCTCACCGCTAAATTCTTTTCT
TTATCTTTTCAATTATATGTTTTAATTTGTCAAATTGTTTTTCCAATTTTGTTGCAAGATCCAAAACCTAAGTCATCTTTACAGCGAGTTGGTTGTTCAT
AGATGCCTTTCTCGTGTCTGAGGGTGACGATATTACTTTCACATCCATTGACGCTGTGTTATGTTGCTCAAGGAATAAATGACAGCACATTCCTTTTGCT
TTAAGTGTCAATGGTACATTTCACGTTTGAATCTTCTTCGTTTGTGCGTTAATGTATCTAGACTTGTGCAATATGCAAATACCTTTACCTCTTTCAAAAA
ATCCATTTTTATGTAACTAGACTTGTGCAATAATGCTCAAAATAAAGATTTGATGGAGTTGGTCAGGCTTCTTGTGCTGTTGTAAATGTGCTTGGAGTTT
GGAATATATTCCCACATCTCATTGTATAATTCTTATCCAGCATGCGTATAGTTTTGTTTCACATTTCCTCTTTTTACCACTAAAAGTATCTCATTTAGCA
AACCATACTTGTTAAGATTTGCAAGAAATTGTGAGATGTTGGTTTTGTTACTGAGAAATGTTGGTAACGCACCATCTAATACACTATTTTGAACATACTT
TCTCTTATTGACTGTAATTTATTAGAAATTACTAAGTCTCGCTTATGATTTTGTAGTTTTTTAATAAATTTGAATCAAAACAGAGAATATGTTGGAAGGA
ATGTGCTTGACAGAGTGTTTATAAGACTCCTCTTCGTTATTTGCATCATTTTCAACATTACTAAAGTAGGAATGAACCAATATTTCTAGGAAATGTATTG
GCCTCTTTGTCTTTAGCAAAATTTTAAGGAAAAGGGTTGAATATGTTTTGTAAGCATTTGAGAATATTTTAATATGATTTCTGTCAATGTGTGTTAAAAA
TTGGAATATTCTTCAGAGGATGTGCAGGTCAAGTAGATGAAGTTTAAGAATTGGTTCATCAATTCTTCATTTGTAAGTTAGTACCTTGTCTACATTTGTA
GGATGACGTTTTTAGTTTTGATGTTGCTAGATGAAGATATAGAACCGTAGTGCTTGCTTCCTCACTGCGTGCTCCTTTCGGCTTGCTTTTTATTTGAGTA
GTTGTTGATAGGGACTAATTTCATTGATTGGGATGTGAAATTGAGATGGAGATTGTGTTATACATTGTTCTCATGCAGATTTCAATATAACATATTTGTG
GC