Detailed information on CNT0001820 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q941D3|PAP8_ARATH, E-value = 2e-23

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001820

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.6471.7182.0261.4415.8116.3138.9557.0950.4841.1611.2631.2260.7945.4222.74leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.588.599.5

Peptides detected in this lncRNA

>peptide 1 (33 aa)
QDKARKGCLRGITKPNNSTHVRPQLDFHHTWHV*

>peptide 2 (38 aa)
MAASLFLPSSPFKLNPPTPNSVTVTLRFPPLNRRYNAL*

>peptide 3 (31 aa)
MNVDLVASILSKENSRLWIVNGFKLYLKRLN*

Sequence

>CNT0001820
CCAAGATAAGGCGAGGAAGGGTTGCCTACGTGGCATCACAAAACCCAATAATTCTACTCATGTAAGACCCCAACTCGATTTTCATCACACGTGGCACGTG
TGAGGCTTCAGCTTTATTTTGCGTCACTGTCGCGTTACGGCTAAGTGGAATCGCCATGGCTGCGTCTCTCTTCCTTCCCTCTTCTCCGTTCAAACTCAAC
CCTCCAACGCCCAACTCTGTTACCGTTACGCTCCGTTTCCCTCCCCTCAATCGCCGTTATAACGCCTTATGAGTCGCTGCTTCCGTTTCCGTTTCCGTTT
CCAGCCCCAACGTGCGAACCGGTCCTGATGAATGTCGATCTTGTTGCTTCCATTCTCTCTAAGGAAAACTCAAGGCTCTGGATAGTGAATGGATTCAAGT
TATATTTGAAGCGCCTGAATTGAAGGTAGGATCATGGTAGGCACTGTATGGTGGCCAGAGTGAAGTTAAACTCAGAATCACTTATGTTGATGAGAAATTC
AGGTTAGGATTGGGTTCCAGAGGTTCCCTGTTTGTTTTTCAAAGAATATGAAATCAAAATGTGATAAGAAAAAATTCCTTCAGGCCTTCAGTGAAAGTTC
TGTCAAGTTTGTATCTTGACACTGCACAATTTCATGTATGATAATATGATTAATAGTGTATATGAGTATTTCATGTATGATAATATGATTAATAGTGTAT
ATGAGTAGGAGCTTGAAAAGACCACGTTACTCTTAAGCTGCAGATTTTGTCTCAAATGGACTAGTGTGTTATAAGGTGCAATGTACTGTAATTAACTTGT
TAGTGAGACAGTGATACAATCTTTCCATTTCCATATTCCTGGAAGTTAACATTTTTTGGTTGATGTAATTGATCTATCATTTTCATTTATGACAGTGGCA
AA