Detailed information on CNT0001821 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001821

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00.0500.5460.1190.3740.1760.2190.552.9831.4891.9170.8530.1710.208leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.833.2

Peptides detected in this lncRNA

>peptide 1 (46 aa)
LVTFYINYLNYRASFFILSWIIIYLIVDGVELSVCSMLRLLCQIED*

>peptide 2 (53 aa)
MPIQFILEFDLVVCRCKYPSVSLGVLVWVCNRNNQSIMHLGIVTMSQEEFGTV*

>peptide 3 (52 aa)
MLYTLLCFSSNEICIYKHGFGGFLVHVTSYYRNLVFDSEKSYFLDYFILFFR*

>peptide 4 (42 aa)
MRKITRWFLFSLLTIRVSGYICLFERLNILQKQVNSTFDSFF*

Sequence

>CNT0001821
GTCTAGTGACTTTTTACATCAATTATTTGAATTATAGAGCATCATTCTTCATTTTGTCATGGATAATCATCTATCTAATAGTTGATGGAGTTGAACTGTC
GGTTTGCAGCATGTTAAGATTACTGTGTCAGATTGAAGATTAAAATATAAAAAAGATATCATGCCTGATACGGTGGATTTAAACGGCTAACTGTTCTCGA
TAAACCTAATTTCTTCTTTGATTTTCCTCTATTGTTCAATTTCCCTGGACTTGATCACGAAACACACGGATTGAATTGTAAACCTGTTTTCTGCAGCGTA
GTGTTCGGAATAGTTTCGTGTAATGTTCTGCGTAGTGTGAAGTGTCGTCAATGGTTTGGTGGCGTCTACTAGTTGAATATTCTTGGATTTGTCTCTTTGT
TTCAATGTTTCACTTAGTTTGCTAGGTTTAATTTGCCGTGACTTGCGCTTGGGTCTTACAGGGAAGATAAGCAACGGATGTGACCGGCAGGGAGGCTGTG
GAAAAGCTGTGTGGCGGAAGATTTCTGTGTGAAGCCTTAGGTTTTATTACCCTTGCATTCATCATTTTATTGTTTGTTTGTTTTGGACTGGCTATGCCTA
TCCAGTTTATTTTGGAATTTGATCTAGTTGTTTGTCGGTGTAAGTACCCCTCTGTTAGTTTGGGAGTTCTTGTGTGGGTTTGTAACAGGAACAATCAAAG
TATTATGCATTTGGGGATTGTTACAATGTCACAGGAAGAATTTGGGACAGTGTGATTGGGTGGTTGACTCTTTGATTGGTTTGGCTCCTTTTACTGTTTT
CTTGATAATGTCTTTAGTAGTCTCATCTTCTAATTGAATATCCTGTTCGTCACAGTGGCACGAGACCTCCCATTTTCTATAGGAGTGATTTTTTCCGCTG
AAATCTGCAGGAGCATGGAAATACTGGTTCAATAGTGTTATTATGATAAAATTTAGCGAATATGATATCATCTAAATTATTTAGTCTTGTGTGGTGTTAT
GTTGTACACTCTACTATGTTTTTCTAGCAATGAGATTTGTATTTACAAGCATGGTTTTGGGGGATTTTTGGTCCATGTAACTTCTTATTACAGGAACTTG
GTTTTTGATTCAGAGAAGAGTTATTTTTTGGATTATTTTATTTTATTTTTTAGATGAGGATTGTTAATCTAGGCAACTTGCGTTTTGCAGCACAGGGTCT
TTTAAATGAAATTTTTATTGTGATTAGTCGTAGCTAAATTGAAGATGGGTGGATCAAAGGATGTCCATTTAAGCAGATGGGTTTAATTTGTCTTGTTTGT
CTGATTGATCATGTCAAATCATCAAATGTATTGAACTTTTGATCTTGTTATTGTGCAGCTTAGTATTTTGGATTATGTTGTGCAACATATTTGTGAAGTA
TCAGGCTAATGCGTAAAATAACTCGGTGGTTTCTTTTCAGTCTTCTAACAATACGAGTTTCTGGCTATATATGTCTATTTGAACGTTTAAATATCCTTCA
AAAACAAGTAAATAGTACATTTGATTCATTTTTTTAAGTTTTATTTCATAAATTAATATTAGTTTATTTTTATTGTTATTGTATTGACCAATCAATATGT
GGTGAGATTGGCAGCTGTTGTATCAGGATTACAACTATAACGAGTCGTGAGATGCTGCTGAAGTTATTGATTTCTCTGAACTCTTAGATTAGACACTGAG
TTGTCTGGAACTGTTTAAGCTACCATATTATATGTTTTTTTTAAGATTAGTTTGTTTCCTTTCTTCTTAGATGAAGCTTTGTTGATCTAGGTTTAGGTAG
CTTCTGTTTCTGTGCACAGTGTTCTTAGGTTTAAGTTGATGATAGGATCTTAGAAAAGAGCTCAGGATTTTACCAGAATATATCAGCAAGAGCTCAGGGT
TATATGATTAGTTTCTTTTATCTTGTTTTTCTTAGTTGAGATTATCTGAATTAATTTTTTATTTTCTTAGGAGTGGCAAAATTGAAGACAGGATCTTAAT
AGCTATCTAGATTTTACCAAATGATAATCAGAAAGAGCAGAGGACTATCTGATTTAATTTCTTTCTGCATCGACTGCAGCACACATTGAATTTTGAACTT
GTTTTTGTGCAGTTTGTGTTTGGAACGATGTTGTGTTGGTTCTTCCCACAAAACACTGAAGTTCTTGCATAATTTAGATTAATCGATGAAATGTTGCTGG
GTTTTTGGTATGACTTCCATTTCCTAACTTCCCTTTTGGATTTTTTTATAGGGAACTTTTGAATTTCCTTTCTTTTTCTATATCAGGGCTTAAATCACCT
TTTGAGACCCCCGCTCCCCCACAAATGGTACTTCTGTATTATTACTCTGGACCCAAATATTTTCCTTACTTCACTTTCTT