Detailed information on CNT0001822 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001822

Peptides detected in this lncRNA

>peptide 1 (63 aa)
DKGRIHNTTKSKPREGNICDDIAFAAQKHQHGCQTHSIFSLFLQNFISAKITIIFSRFILPQN*

>peptide 2 (45 aa)
MFPKAFLLNVRRYWQTAGEREGENPMKTPLPYIIIFDDSVPNAWA*

>peptide 3 (31 aa)
MCYHNSMVVMEDLQNRRSLQLFLGYNPVKMV*

>peptide 4 (98 aa)
IRVGSTTQQNPSQEKGTYVMTLHLQHKNINMAAKLTLSSPFSFKTSFLPKSPSFSLGLYSPRTNVTGVKVHAKLGGGDEQAKKGGKKKFITREEEPQQ*

Sequence

>CNT0001822
AGATAAGGGTAGGATCCACAACACAACAAAATCCAAGCCAAGAGAAGGGAACATATGTGATGACATTGCATTTGCAGCACAAAAACATCAACATGGCTGC
CAAACTCACTCTATCTTCTCCCTTTTCCTTCAAAACTTCATTTCTGCCAAAATCACCATCATTTTCTCTAGGTTTATACTCCCCCAGAACTAATGTTACC
GGTGTCAAAGTTCATGCTAAATTAGGTGGTGGAGATGAACAAGCCAAGAAAGGAGGAAAGAAGAAATTCATAACCAGAGAGGAAGAACCACAACAGTAAC
AATTCATAAGTTTTATTTTTTCCATTTCCTTAATTTTCTGGTCACCTCGTATGTTTCCCAAAGCCTTTCTATTGAATGTGCGCAGGTATTGGCAGACAGC
AGGAGAAAGGGAAGGAGAGAATCCCATGAAGACCCCTCTTCCTTACATTATCATATTTGATGATTCAGTTCCAAATGCGTGGGCCTAGGGACAAAACGAC
TACCACTTGCGGATGAAGAAGCCTCATGTCTTATTGCCACTGGTAGTTGAGGTGGTAATTCTGGCGGGGGCTTGCTGAACTCCTCTTCATTTAAGTATGT
GTTATCATAACTCGATGGTGGTGATGGAGGATCTTCAAAATCGGAGAAGTTTGCAACTATTTCTGGGATATAATCCTGTAAAAATGGTTTAAACAAGAAG
CTAGGTGAGGCTATCTTTGTATATATAGATGAATTGCACGAGTTGAAGGGATTGTAAGTTATGACCATATTTTTGGGATGTTAACTCATTCAATACACTT
GTGTGTAAACAAAATTTTCTAGCAATGGATAGAAGACTGTTGAAATCAAT

lncRNA-RNA interactions

Number of interactions: 12

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA02G47890.1 Uncharacterized protein protein coding CNT0001822 821 392 CDS Trans
GLYMA02G47890.2 Uncharacterized protein protein coding CNT0001822 821 392 CDS Trans
GLYMA02G47890.3 Uncharacterized protein protein coding CNT0001822 821 392 CDS Trans
GLYMA02G47890.4 Uncharacterized protein protein coding CNT0001822 821 392 CDS Trans
GLYMA02G47890.5 Uncharacterized protein protein coding CNT0001822 821 392 CDS Trans
GLYMA02G47890.6 Uncharacterized protein protein coding CNT0001822 821 392 CDS Trans
GLYMA14G00710.2 Uncharacterized protein protein coding CNT0001822 1090 392 CDS Cis
GLYMA14G00710.3 Uncharacterized protein protein coding CNT0001822 1090 392 CDS Cis
GLYMA14G00710.4 Uncharacterized protein protein coding CNT0001822 1090 392 CDS Cis
GLYMA14G00710.5 Uncharacterized protein protein coding CNT0001822 1090 392 CDS Cis
GLYMA14G00710.6 Uncharacterized protein protein coding CNT0001822 1090 392 CDS Cis
GLYMA14G00710.7 Uncharacterized protein protein coding CNT0001822 1090 392 CDS Cis