Detailed information on CNT0001841 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001841

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.5770.6940.946000000000000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.050.10.150.20.250.30.350.40.450.50.550.60.650.70.750.80.850.90.951

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MNYEASRCYNTSIRLSLDPDALLVWRLKRNCI*

Sequence

>CNT0001841
CTGAAACTGAAGCCAAAAATGAAATAAACAAATATCCCAACAAAGCTCATGAGAAGTATGAAATGGGTCCATAGATGATGGAACACATGATGATATGAAT
TATGAAGCATCGCGCTGCTACAACACCAGCATCCGTTTATCTCTGGACCCTGATGCTCTTCTCGTTTGGAGATTGAAACGGAACTGTATATGAACAGCAC
AGGTCTCACTTCAACAAGTAAAGGATAGCATCATATCTTTTGAGCAGTAGAACAGAGCTGCATGATATTAACCCCCCATGATCCATGACCTTACTCCAGT
GCCCAGTCTTGACCTGTAATTGAATTATGAATATGCTTGCTAACATTCAGTCATCTACAATCTTCAAACGCCAAGCATAAAGAATAGCATACAAGATCCA
GTAAATGTAAAACAAGTTAGTTTGATTCAAGCTTCTGGCTTCTGCTCACTTTCTGGTATGACAGTATCTTGCAAATCAATCTGACCTGCATAACCAAAGG
GTGCTATTACATCAG

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA14G09130.4 Uncharacterized protein protein coding CNT0001841 970 348 CDS_UTR Cis
GLYMA14G09130.5 Uncharacterized protein protein coding CNT0001841 970 348 CDS_UTR Cis
GLYMA14G09130.6 Uncharacterized protein protein coding CNT0001841 970 348 CDS_UTR Cis
GLYMA17G36050.1 protein coding CNT0001841 594 352 CDS_UTR Trans