Detailed information on CNT0001842 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001842

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MQIIYLLSNSCEDCKLPCIYWRKISIITTLISEAELPS*

>peptide 2 (39 aa)
LVALDIFFASSNLLHTFHSLSLSFSLCVRTVTHTHTHYS*

>peptide 3 (46 aa)
MFFNLYGAIITFDGDVRFSVWISGCLWRESNQTFLVKCFNPYNPCW*

>peptide 4 (88 aa)
MLRSLSLSDSSTDSNSQFLCFSRRNSFPNTAFTRQPCSLRFSRSFVDSAFMERVAAVSVPFYNGENFPSSEFVWFPKKLTARKREVRG*

>peptide 5 (83 aa)
MAGRKCSKLICLFFECCPQNDDKRFFLELENCGVLIHRYSGKKNEETSKLEDANITFQMIFFSQFFFHIQAFLMVYANYISPK*

>peptide 6 (37 aa)
MDALIDVVIISGLYCVTSKLLSLSSRRGSKLCNILVHD

>peptide 7 (64 aa)
MLEKVIQQQNASDMCSVDCNIQQKQLGSSNADCRKKCLYLNNLLSIINLFTCLRNMRFGDGCFN*

Sequence

>CNT0001842
ACCTAGTGGCTCTTGATATTTTCTTCGCGTCCTCTAACCTCCTTCACACGTTTCATTCTCTCTCCCTCTCTTTCTCTCTCTGCGTGCGTACGGTCACACA
CACACACACACACTATTCGTAGATTGAATCCTCCGAAGCAGATCTCACATTCAACCTTCAATGCTTCGTTCTCTTTCCCTCTCCGATTCATCCACGGATT
CCAATTCTCAGTTTCTTTGTTTCTCTCGTCGAAATTCGTTTCCGAACACCGCATTCACGCGCCAACCTTGTTCGCTTCGCTTCTCTCGCAGCTTCGTGGA
TTCCGCTTTCATGGAACGAGTTGCTGCGGTTTCTGTCCCGTTCTACAACGGCGAGAATTTTCCTTCTTCTGAATTCGTTTGGTTTCCGAAAAAATTAACC
GCGAGAAAAAGAGAGGTTAGAGGGTAGAGATGTTCTTTAATCTATATGGAGCAATAATCACTTTCGATGGAGACGTGCGTTTCAGCGTTTGGATCTCAGG
GTGCTTGTGGAGGGAATCAAACCAAACCTTTCTAGTGAAGTGCTTCAATCCATACAACCCATGTTGGTAGTTCATTCTACAAGCTGCACTTTGCACCCGT
GTCTTTGATTGTATAGTTCCATCCGAGAAGAAAGGTAGAAGTGGAAGTCATTAAAATATCTATTTCTTTCAGAGTGCTTAACTGGCATCATAATTTGTTA
ATTATGTTATGCTTTGGCCAATGTGAATGTTTGTAAAGAAGAGTGGTAAACATTTTACTTTTTTGGTGTATATGACCATGCCAACGAAGAACTGAGATGT
CCTGCTAAGTTCCTGCTTTTATCTTATTAAACACAGTGGGTGCTAGATTCTCAATTTTTCAGGTAGGTTTTCGTAGATTTTAGAACAATCTGTTGCATTC
TACCCTTCAAAGAGTTTGTCATGGTTTACTGAATCCTGAACTTCAGAAAAGAATGGCTGGGAGGAAGTGCTCCAAATTGATTTGCTTATTTTTCGAATGC
TGCCCCCAAAATGATGATAAAAGGTTTTTTCTCGAACTTGAAAATTGTGGTGTCTTAATTCACCGATACTCTGGAAAGAAAAATGAAGAAACTAGCAAAC
TTGAGGATGCAAATATTACATTCCAAATGATATTTTTCAGTCAATTCTTTTTCCACATTCAGGCATTTCTAATGGTCTATGCAAATTATATATCTCCTAA
GTAATTCATGTGAAGATTGTAAACTCCCATGCATATATTGGCGCAAGATATCTATAATAACTACCTTAATTTCTGAAGCTGAACTCCCAAGTTGACAAGG
TTCTTCTTTTGATTTGTTGTATCGGTCAATTACTGATTTCATGCTGGAAAAAGTCATTCAACAACAAAATGCGTCAGATATGTGCTCTGTTGACTGTAAC
ATTCAACAAAAGCAATTAGGTTCATCCAATGCAGATTGTAGGAAGAAATGTTTATACCTCAATAATCTTTTATCAATTATAAACTTGTTCACATGTCTTA
GGAATATGAGATTTGGGGATGGATGCTTTAATTGATGTAGTAATTATATCCGGTCTTTACTGTGTAACTTCAAAATTACTCTCTCTCTCTTCGAGAAGGG
GGAGTAAATTGTGTAATATATTAGTTCATGAC

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA02G38091.1 Uncharacterized protein protein coding CNT0001842 1039 573 CDS Trans
GLYMA02G38091.2 Uncharacterized protein protein coding CNT0001842 582 329 CDS_UTR Trans
GLYMA14G36221.1 Uncharacterized protein protein coding CNT0001842 1536 579 CDS Cis
GLYMA14G36221.2 Uncharacterized protein protein coding CNT0001842 1536 579 CDS Cis