Detailed information on CNT0001881 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LZA6|SDP1_ARATH, E-value = 7e-22

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001881

Peptides detected in this lncRNA

>peptide 1 (41 aa)
PHTHQEQAQCHNLLLWLKVSPRYIFSLGWLPFEALHKKGSV*

>peptide 2 (32 aa)
TTHSSRASSMPQFAFMAESFSQVHLLPWLVAF*

>peptide 3 (31 aa)
MNIERTFCHIIPVCFQGNFIKYCNQRLGVNH*

Sequence

>CNT0001881
ACCACACACTCATCAAGAGCAAGCTCAATGCCACAATTTGCTTTTATGGCTGAAAGTTTCTCCCAGGTACATCTTCTCCCTTGGTTGGTTGCCTTTTGAA
GCTCTCCATAAGAAGGGTTCTGTATAATTTTGGTGTACTGGAACAGGACATAGGTAAAACAACAGTCACAATATGCACAAGTTAATCACTAATTAACTGA
GTCATCTTTCGTAAATGATACATAAATAAATTCCTGAACCTTTAGCATAAGTGTATGAATATAGAAAGAACATTTTGCCACATAATTCCAGTATGTTTCC
AAGGAAACTTCATCAAGTATTGTAATCAAAGGCTTGGTGTTAACCACTAGCACTTTTTATTTGAATTGAGATCTAGCTGAAGTTATTTTATCCTTATATA
TCTAGCTGTTATTTTACTGTTCTTTAGGTGCATACCTGAGCAAGAGTTGCGGGAATAACAACAGTCACATCACCTTCCCAGTCTTGAGCAAACAACTTAG
CAAGTCCACCTAATGGAAAACCAAGTTCCAGTATTTGATTACACCTATGTTTCACCTCCATCTCCACAAGATGAGCAAGCTGAAAAATTAAAA

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA03G28660.1 Uncharacterized protein protein coding CNT0001881 1432 590 CDS Trans
GLYMA19G31410.1 Uncharacterized protein protein coding CNT0001881 1620 593 CDS Cis