Detailed information on CNT0001883 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9ZQ98|U73C2_ARATH, E-value = 3e-18

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0001883

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MRRAPFFNRFLCHLTEFGCPFSSLFDFFSIIIHQHAYCPLNVLFLHQHTSFLFLSPIHWNFCPNIHTNLLHL*

>peptide 2 (40 aa)
MHIALLMSSFFTNTPVFSSSPQFIGTSAPTFTRIYYTYDK*

>peptide 3 (90 aa)
MISWISKVTLEYDEPPFSTALLAISASSLTLFLLSSLSLVSSINFAIALSTSFFFTCTPISTSLPHVSGISTPTFNPTFSTCTTRLSFKN*

>peptide 4 (53 aa)
PYIAINFIHNFVKYIKEKCHAIHCAYTCIINKICSHCHYMYDFPQNQTIPIHT*

>peptide 5 (30 aa)
MFPLSLHVRFPPKSDYTHTYLINMTLPTRK*

Sequence

>CNT0001883
ACCATACATAGCCATCAATTTCATTCATAATTTTGTGAAATATATAAAAGAAAAATGCCATGCCATACATTGTGCCTATACTTGTATCATAAATAAGATA
TGTTCCCATTGTCATTACATGTACGATTTCCCCCAAAATCAGACTATACCCATACATACTTAATCAACATGACATTACCCACGCGCAAATAAGTAAAAAT
AGTTACATAAGAAGAAACAAAATATTTAGAAAACTTTTACAAGATTAACCATTAACAACATCATGCACTACATGTAAATTGCGACTCTTTGGGTGTCAAC
TTTATATCCTCCTTGCTACTTGATTGTTGCATGATGTCTTGGATAAGCCAAGTCATTTCAAGATGAGAAGAGCCCCCTTTTTCAACCGCTTTCTTTGCCA
TCTCACAGAGTTTGGTTGCCCTTTCTCTTCTCTCTTTGATTTCTTCTCCATCATCATCCATCAGCATGCATATTGCCCTCTTAATGTCCTCTTTCTTCAC
CAACACACCAGTTTTCTCTTCCTCTCCCCAATTCATTGGAACTTCTGCCCCAACATTCACACGAATCTACTACACTTATGACAAATGAGTTGCCTTTTAC
TTCAAATTGGTTTATGACAAATGAGATTATCACACATCTCTCTAGGTTTTTTGCATGATATCCTGGATAAGCAAGGTCACATTAGAATATGATGAACCCC
CTTTCTCTACGGCTCTGTTAGCCATCTCAGCAAGCTCTCTCACCCTTTTTCTTCTTTCTTCACTTTCGCTTGTCTCATCCATCAACTTTGCTATTGCCCT
TTCAACATCTTTCTTCTTCACTTGCACACCAATTTCCACTTCCTTACCCCATGTAAGTGGAATTTCCACCCCAACCTTCAATCCAACTTTTAGTACATGC
ACCACTAGACTTTCATTCAAAAACTGATCTGCAAATAGTGGCCACGTAACATTGGCACCCCAGCACATATTGCTTC

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA19G37108.1 Uncharacterized protein protein coding CNT0001883 643 242 CDS_UTR Cis