Detailed information on CNT0001887 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q944N8|ENT6_ARATH, E-value = 2e-15

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001887

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MDDPANLLLGTHQWLSHYFCSHCGTKRLQGKFTQPTIHK*

>peptide 2 (60 aa)
MASESASRLTSMADSYIGSLISLTSKSEIKYKGILYHINTEESNIGLKNSILLLPTSFFL*

>peptide 3 (29 aa)
MAISLFLFSLWHEEVTRQVHPTHNSQMKN*

>peptide 4 (49 aa)
MAELEILGLFIFVQIRFYCLQNRGSGESLMAKAVMMGGVLFGKSTVVGA*

>peptide 5 (41 aa)
MWHGRTRTHKKSYEPLLWCSLLDDDLIIFAKNSMDLCSVLP*

>peptide 6 (52 aa)
MILLTSFLGLTNGYLTIFVLTVARRGYKASSPNPQFTNEKLIQIHFMDLISI*

>peptide 7 (50 aa)
MVSTLETIYKSVSDSRELLSVCQDLLNSLQINVLKYLYMILNFSMLEMSS*

>peptide 8 (65 aa)
MVGLGPIKRVMNPSYGVHCWMMTLSFSLRTLWICVLFYLNSFGFHLYFLNIYTLFTMVERYFQYT*

Sequence

>CNT0001887
CAAGGGGCCCCAAAACCCAAATCCTAATCTAATTCGCTTGCGATTATGGCGTCCGAGAGTGCTTCTCGATTGACTTCCATGGCTGATTCGTACATTGGGA
GCTTGATAAGCTTGACCTCTAAGAGTGAGATCAAATACAAAGGTATTCTCTACCACATCAACACTGAAGAGTCCAATATTGGCCTCAAAAATAGTATTCT
TCTGCTACCCACTTCTTTTTTCTTATGAATTTCCTTTCAAGATGTTAATAATATGCGTCACTCGAGAATGAGTTGCATTTGCAGAGCCTCTCTGACCGCA
TGGCGGAGCTAGAGATCTTGGGGCTATTCATTTTTGTGCAGATTCGGTTTTATTGTTTGCAAAACAGAGGGAGCGGTGAGTCACTGATGGCGAAGGCAGT
GATGATGGGTGGGGTCCTGTTTGGAAAAAGCACTGTTGTTGGTGCTTAGCTCAGTTGGCTGAGTCTAATTATAGATTCTTGTTGATCCCAGCATTCTACT
TCACAACAAAATATGGTGACCAGGGATGGATGATCCTGCTAACCTCCTTCTTGGGACTCACCAATGGCTATCTCACTATTTTTGTTCTCACTGTGGCACG
AAGAGGTTACAAGGCAAGTTCACCCAACCCACAATTCACAAATGAAAAACTAATACAAATACATTTTATGGATTTAATTTCTATTTAAAAAGAGAAATGA
TATTTGAGAAATCAATACTAAATATTTGCTCATCTAATCTAATATACTTTAAAAGAGCTTAAGCCTTTTGGAGAAGCTGAAGGATAAAGCCCGTTGGAAG
ACCAAAATTCTGCCATATAACCATACCATTGAGTAAGGTGACTAATTTTTAATTTTGTTGCTAAAACTCTTGGAAATCCATTAAATATTCATTGCATAGA
ACTTATGTTACTCTAATTGATTGACATGGTTAGCACATTAGAGACAATATATAAGTCAGTCAGTGATTCAAGGGAACTGTTATCGGTCTGTCAGGATTTA
TTAAATTCCTTGCAAATCAATGTACTCAAGTACCTCTACATGATTTTAAATTTTAGTATGTTAGAAATGTCAAGTTAAGTAATAGTGAGTGAATTCTAGG
TGTTTATGGCATAATTGAGTGAAAAGTCACTTAACTTAAAATTGATGTGGCATGGTAGGACTAGGACCCATAAAAAGAGTTATGAACCCCTCCTATGGTG
TTCACTGTTGGATGATGACCTTATCATTTTCGCTAAGAACTCTATGGATTTGTGTTCTGTTTTACCTTAACTCCTTTGGGTTTCATTTATATTTTTTGAA
TATTTATACATTGTTTACTATGGTAGAGCGTTATTTTCAATATACATGACTACAATAGTATAGTACATGCTAGTTCAAATGAGTAATGGGTTGGGGCTTT
TAGATTGGTATCAAGGGG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA04G27220.1 Uncharacterized protein protein coding CNT0001887 126 68 CDS Trans