Detailed information on CNT0001899 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q949R9|MPC1_ARATH, E-value = 2e-13

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0010308, E-value = 1e-06 (S. tuberosum)

Expression of CNT0001899

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.2992.2452.2940.4370.47616.63413.39.4850.8812.7391.1920.5580.3210.2740.111leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)0123456789101112131415161718

Peptides detected in this lncRNA

>peptide 1 (40 aa)
NFVTSTRRYVSILDSNTSSQRIFCFTSLASFLCFTRWPVS*

>peptide 2 (43 aa)
MVNRQSREPLPTQEFIMRAYQESQREFNKNLWFCALEFIQSQC*

>peptide 3 (60 aa)
MCVYSALCVRGLLGWYVRLTHIFLYAMPPMRQCNCINSQDGSELKGKAMVEITPTTINSP*

>peptide 4 (45 aa)
FCNFHSKVRIYFGLKYIESEDFLLHFIGFFLVLYPVASVIAVSLR*

>peptide 5 (45 aa)
MTMNENTRRHICINMSNVWMLTSISHHFQTIYFSHKILFIIDNTS*

>peptide 6 (49 aa)
MVRPPNPHLLVCHASNETVQLYQLSRWFRAQRKSNGRDNTDDNQQPIMH*

>peptide 7 (31 aa)
MNILRSFWNSPTDLKTTHFWDPAFNWSLPFA*

>peptide 8 (36 aa)
MVLCFRIHSITMLATIKHLLYFIHLNPQLIVEFVSL*

Sequence

>CNT0001899
AATTTTGTAACTTCCACTCGAAGGTACGTATCTATTTTGGACTCAAATACATCGAGTCAGAGGATTTTCTGCTTCACTTCATTGGCTTCTTTCTTGTGCT
TTACCCGGTGGCCAGTGTCATAGCTGTTTCTCTAAGATAAAGAACATGTGATGCTGTTGAAATTGAAGTGAACCAAATTGATTGATCTCCCAAATCCTAA
TTTGCAGGCCGCAAAATACTGAAAATAGTTCTCATCAAGATGAACATCTTGCGCTCTTTTTGGAACAGTCCCACTGACCTCAAAACAACTCATTTTTGGG
ATCCTGCCTTCAACTGGAGCCTTCCTTTTGCGTGATGTGTGTTTATTCGGCACTGTGCGTGAGGGGTTTGCTTGGATGGTACGTCCGCCTAACCCACATC
TTCTTGTATGCCATGCCTCCAATGAGACAGTGCAACTGTATCAACTCTCAAGATGGTTCAGAGCTCAAAGGAAAAGCAATGGTCGAGATAACACCGACGA
CAATCAACAGCCCATAATGCATTGATGCAAACAAGGTAATTATTCACTCGTCAGGAATCCTGTAGAGCTTTGTCTTTTGTGGTAGAAAAGCAGTGACCGA
GATAGCACCCACAACAATCAACATGCCATAATGCATTGACATACACGAGGTAACTATTCACTCATTAGGAATCCTATAGAGCTTCACCTTTTGTGGTCGA
GATAGCACCCACAACAATCAATGGCCCAAATTGCATTGATGTAAACAAGGTTACTTTTCACTCGTCAAGAATTCTGCAAAGCTTCAAGTTTGGTGCCAAA
AAAGGAGCAACCAAGATGACAATGAATGAAAATACTCGACGACATATTTGTATAAATATGAGTAATGTATGGATGTTAACTTCAATATCTCATCATTTTC
AAACCATTTATTTTTCTCACAAAATCTTATTCATCATAGATAATACATCGTGAGAACTTCTCGACATTGATGACTCAAACCTCTCATCCTTTGTTCACCC
TTCTAACCCAAAATTAGTCATCCTTTAGTTCAAGCCCACTTATTCCTAATCCCATAGGGGTCGTATAGGATGTCATGGTGAATCGCCAATCTAGGGAGCC
ACTCCCAACTCAAGAATTCATAATGCGTGCCTACCAAGAAAGCCAACGTGAATTTAACAAGAATCTATGGTTTTGTGCTTTAGAATTCATTCAATCACAA
TGCTAGCTACCATAAAACATTTATTGTATTTCATACACCTAAACCCTCAATTGATTGTTGAATTTGTATCATTATAAGATTGGTAGATGTTGATGGCACA
CCTCACAGGACACCGTTAGAGTCCATTGGTTATACTTTTTATCGTGTATCTTTAACAATCGTAATTATCAAAACTTGTACCCCGATGGTTTTGGTGACAT
AAAAGTTACTCTCAAGGTAGTCAAACTTAATTCAATCTTTCATGATTTTGGGATATTCATTGATTAGAGTTTTAATTTCAAGATCCT