Detailed information on CNT0001902 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001902

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.4230.2540.0870.4620.2020.380.0990.4644.145.1324.3224.4264.2472.6091.875leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.5

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MASSYSCVNCNLREMISLIVHKCVHILFESSP*

>peptide 2 (64 aa)
MLCPIEILGKGSKKVLGMICNGPTRLQRLLTLLETGSTQATRLTAARQIAKSHPQHLTSLLKKL*

>peptide 3 (50 aa)
PSLSLANPKSRRHPRTQRRFLHFYFYFEGGPILEARQREPRRPPILPVRP*

>peptide 4 (48 aa)
MNKVLEFGALLASGGQELDNTCHENNWVLPAYHLYHADGKTIKFSQNT*

>peptide 5 (51 aa)
PLSLSQILSLAVTLARNVAFFTFTFTSREAQFSRPGRGSRGGRQSCPCGRR*

Sequence

>CNT0001902
CCCTCTCTCTCTCTCGCAAATCCTAAGTCTCGCCGTCACCCTCGCACGCAACGTCGCTTTCTTCACTTTTACTTTTACTTCGAGGGAGGCCCAATTCTCG
AGGCCCGGCAGAGGGAGCCGAGGAGGCCGCCAATCCTGCCCGTGCGGCCGTAGATGAGGAAGTTTAGGGGCTGGGCCGGTGTGGCGCCCTTGGCTGGGAA
GCCCCAACACATATTTCCTACATCTGGAGCTGCTTAATTTTATGATTATTGCAATCTCAACTTAGCTTCTTTGTGGGCCATCTCCTAGACCGAATGATAT
GAACCCATTTCTTGGTGCGGCAATGGCTCAGCAAATATTGTGTTATTTCCATTCAGTTATTTGATCAATTCAAGCAGTGAAGGTTCAAGAAATCCAATAG
CAGATAGCAGTCTTCAAGTGCTTCTTGTTCTCATTCATTATCATAAATGTCTTGTGAGTGAGGGCTACTCTGTCCTAAAGAATCAAGTATCTGCCTCTTC
AGATTCTTTACCAAAAGAGAATACATATTTTTCTAACAACCCTTACTGCAGGGCCTTAGAGCGTGCAACTGATTGTGAATTGGATTGTGTAGATTTAGAG
GGTAATGCACACAGTGACCAACTTGTAAAATTGCCTTTTGCACCGTTGTTTGATACCCTTGGCATCCTCATACTAGATGAACAAATTTGGTGTTGATTTA
TTCTGTTGATCACACTAGCAACTCTATCCAGCAACATCACAACCAAGAATGTTGTGTCCTATTGAAATTTTAGGCAAAGGGAGCAAAAAAGTACTTGGAA
TGATTTGCAATGGCCCAACCAGGCTTCAGCGTTTGCTCACTCTCCTAGAGACTGGGTCAACCCAAGCAACAAGGTTGACTGCTGCTCGTCAGATAGCAAA
ATCACACCCTCAACACTTGACCAGTCTTCTTAAGAAGCTTTGATATGAACAAGGTGCTTGAATTTGGAGCCTTATTAGCATCAGGAGGACAGGAACTAGA
CAATACATGTCACGAAAACAATTGGGTTCTACCAGCTTATCATTTATACCATGCAGATGGTAAGACTATCAAATTTAGCCAAAATACATGAGCAGCATAA
ATTCTCTTCATGAATCAAGTTATGGACTATTAAATTTAATTTAATTAGGTATAATTAGGATTTAACCATTGCACTTTTTTGTTGACCTTATTAATGGCCA
GCAGTTATTCATGTGTCAATTGTAATTTGCGTGAAATGATCTCATTAATTGTGCACAAGTGTGTGCATATATTATTTGAGAGTTCTCCGTAATTTAATTT
GACTTCTTTAATTTTACTTCTTGGATAAGATATTTCAAATAACTTACAATATTCCATATGCCTTAATTTCACATATTCAGTCATTGGGGCTTGGCCAAGG
TGGGAA