Detailed information on CNT0001910 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|F4J0W4|MIRO2_ARATH, E-value = 2e-07

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001910

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)4.9096.30300.3300000.14800001.2432.01leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.57

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MFIYIDSLVTHLYDPSTLRKIKNLLFKLVLDGLR*

>peptide 2 (49 aa)
MLNFETHHLRLRQLLVSDLVYCPLCISTISFHKFFMLLYQHRACVFRQL*

>peptide 3 (55 aa)
MIQCHNTEFCTRLWNGETPEVVPSHAKEFHTLSIGKMRVLFTGNSSAWEANKFYQ*

Sequence

>CNT0001910
CATATGGATATTAGTTTCGGTTTTATTTTATTTGATTGAATTTGATGAACCTGCAGGTTGTAGCCTCTGTGTACGTAAATAACATTCACATAACAATTTT
GCCTATTTTTTTTATCACTTTGTAGTCTGTAGTTATTGGTTAATGTTCATATATATTGATTCCCTGGTCACTCATTTATATGATCCTTCTACCTTGAGAA
AAATAAAGAATCTTTTGTTTAAACTAGTGCTAGATGGACTGAGGTGATTCATTTTAACGATATATATGTGAATTCTTATACTTATCTATGTAGTATTCTT
TTGATTATCTTTTACTCATATAATACTTCCAAGAATTCCATCAAAGCTAAATCTTTCAAGGTAATTTAAGGTATTTAAATCTGTGATTGCAGTTCATTGG
AATTTTTCAAGAAACAATTGTGCAAGAACTGGTTGGGGAGCTGGTAAGTACACATTGATTTTGAATGCTGATGACAAATTGTAATGTTTTATAATTAGGG
AACTAAAAACAAGGTTAACAGAACGAGTATTGTTTGTAACTTTCCAATCTTGTGATGTTAAACTTTGAAACACACCACTTAAGATTAAGGCAGTTACTTG
TTAGTGACTTAGTGTACTGTCCTTTGTGCATCAGTACCATAAGTTTCCACAAGTTTTTTATGCTTCTTTACCAGCACCGGGCCTGTGTTTTTAGGCAATT
ATGAATATGCTTTCCTGTGTCTAGCTGTCATCAGAAGTTTACCTCTTATTCTAAAAATAGTCCAAGGCATGGATTCACTAAGCTGCTTATTTTGTAAATT
CACATAATTGAGACCATGTTTTCATATGCTTGGACTCAACAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGGTAATGTAA
TTAATTTCAAGAATATGCCCAGTTACTTTCTCAATAGTGTTGTATTCTACTGAATTTCATTATAATTAGCAGTGTTGCAGAGTATATATAGGTAATGTTA
CAAGATATAACAAGAGTAATTTTAGATTATTGGAAAAGCTTCTTGTAGATTTGATTATTTGGTACATTTGAAGTGAGATGAACTCTACATTACAAATTAT
CTAACTCTGGTCATAGTCATTGTATGTAGTTGTTTTTAGGCAAGGTTGTCGTATCTTGTCAAATTCATGTTATATTATAAGAAAGTGATTCTTAGATACT
TGTATTAGTATGACCATACCAGATTTGCTAATCTAGTTTAATTCATAGTTACGTATTTGGTTATTTATTTTTGGCATTTTGCTCCTGTAACTTAGTTTTG
CTTTTTTCTCTTTGTTTTCCAGCTCAGATGAACATTCATGGAAGAAATCCAGAGATTTGCTTGAGAAGGTTGGTAGACAAGGAGATCTAACTGGTTATAG
AGTTTCTTGTCTCCTTATTGGCGCAAAGGATTATTTAACTCCATATCCAAGGGCAGTACAAGATTCAGTTAAGGTAAAATAAGCATGATTCAATGCCACA
ATACTGAATTTTGTACACGACTGTGGAATGGGGAAACCCCTGAAGTTGTACCGTCACATGCAAAGGAGTTCCATACACTATCTATTGGAAAAATGAGAGT
GCTTTTTACAGGAAATTCTAGTGCTTGGGAAGCCAACAAATTTTACCAGTGATAGTGTGGGAACCCGCAATATAAATATAGCAGTCAGGCACATATGATG
GAACTCAAATGCTGGTGAAAGCATAAGAAATTATGTAGGAGTTTGTCGGATAACTTTTATCTTAAAGATCCTCAACCTCAAACAGGGCTCAGTAAATTCA
GCACTGCTGCTGCCATTGAAGAACCAATTAAACCACTAGTTAAAGTAGAACACACCCAACTCTTATTTGATGGAAAATTTGTTGATGCTGCTACTAACGG
TTATTTCAGCAACCGTCTTAATAAATTCTACATTCTAAGACGGTTACAAAACCGTCATTATAAATAT