Detailed information on CNT0001913 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|F4J0W4|MIRO2_ARATH, E-value = 2e-08

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001913

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)6.8227.38600.47400000.21200001.7822.762leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.58

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MIQCHNTEFCTRLWNGETPEVVPSHAKEFHTLSIGKMRVLFTGNSSAWEANKFYQ*

>peptide 2 (49 aa)
MLNFETHHLRLRQLLVSDLVYCPLCISTISFHKFFMLLYQHRACVFRQL*

>peptide 3 (33 aa)
MVNSMVERATSDMLIGPDWAMNIEICDMLNHDP*

>peptide 4 (53 aa)
MTLETHRSRTNRRSERKIVCRFAFFWDLRRRCGDSAAADFADLAAGRVRASGI*

Sequence

>CNT0001913
ATGGTGAATTCCATGGTGGAACGTGCCACGAGCGACATGCTCATAGGGCCTGATTGGGCCATGAACATCGAGATCTGCGACATGCTCAATCATGACCCTT
GAGACTCATAGGAGCCGAACAAATCGTCGCTCAGAGAGGAAAATTGTGTGTCGTTTCGCCTTCTTCTGGGATCTCCGTCGTCGATGTGGCGACAGTGCCG
CCGCGGATTTTGCCGATTTGGCTGCCGGAAGAGTTCGAGCCAGTGGTATTTAAATCTGTGATTGCAGTTCATTGGAATTTTTCAAGAAACAATTGTGCAA
GAACTGGTTGGGGAGCTGGTAAGTACACATTGATTTTGAATGCTGATGACAAATTGTAATGTTTTATAATTAGGGAACTAAAAACAAGGTTAACAGAACG
AGTATTGTTTGTAACTTTCCAATCTTGTGATGTTAAACTTTGAAACACACCACTTAAGATTAAGGCAGTTACTTGTTAGTGACTTAGTGTACTGTCCTTT
GTGCATCAGTACCATAAGTTTCCACAAGTTTTTTATGCTTCTTTACCAGCACCGGGCCTGTGTTTTTAGGCAATTATGAATATGCTTTCCTGTGTCTAGC
TGTCATCAGAAGTTTACCTCTTATTCTAAAAATAGTCCAAGGCATGGATTCACTAAGCTGCTTATTTTGTAAATTCACATAATTGAGACCATGTTTTCAT
ATGCTTGGACTCAACAGAATTGAACGGCTCAGATGAACATTCATGGAAGAAATCCAGAGATTTGCTTGAGAAGGTTGGTAGACAAGGAGATCTAACTGGT
TATAGAGTTTCTTGTCTCCTTATTGGCGCAAAGGATTATTTAACTCCATATCCAAGGGCAGTACAAGATTCAGTTAAGGTAAAATAAGCATGATTCAATG
CCACAATACTGAATTTTGTACACGACTGTGGAATGGGGAAACCCCTGAAGTTGTACCGTCACATGCAAAGGAGTTCCATACACTATCTATTGGAAAAATG
AGAGTGCTTTTTACAGGAAATTCTAGTGCTTGGGAAGCCAACAAATTTTACCAGTGATAGTGTGGGAACCCGCAATATAAATATAGCAGTCAGGCACATA
TGATGGAACTCAAATGCTGGTGAAAGCATAAGAAATTATGTAGGAGTTTGTCGGATAACTTTTATCTTAAAGATCCTCAACCTCAAACAGGGCTCAGTAA
ATTCAGCACTGCTGCTGCCATTGAAGAACCAATTAAACCACTAGTTAAAGTAGAACACACCCAACTCTTATTTGATGGAAAATTTGTTGATGCTGCTACT
AACGGTTATTTCAGCAACCGTCTTAATAAATTCTACATTCTAAGACGGTTACAAAACCGTCATTATAAATAT