Detailed information on CNT0001914 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001914

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.4170.2390.0490.260.0570.2140.1120.4192.6253.8252.8923.4363.1111.471.057leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.25

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MLDFYIHMKSWVFMWYPNFVFLFFKNHSMNQVAIACIFYYFATLFLLVTSFCSNI*

>peptide 2 (37 aa)
MQCNPSLYSVAFLPILMFHGGNIVPKLREHKRHSPDF*

>peptide 3 (52 aa)
MFIIQIVIYFSVSLVRFSFLGKNFWVYLVVSALLFLGHAHVQAYIELNSQCS*

>peptide 4 (48 aa)
MNKVLEFGALLASGGQELDNTCHENNWVLPAYHLYHADGKTIKFSQNT*

>peptide 5 (32 aa)
MASSYSCVNCNLREMISLIVHKCVHILFESSP*

>peptide 6 (64 aa)
MLCPIEILGKGSKKVLGMICNGPTRLQRLLTLLETGSTQATRLTAARQIAKSHPQHLTSLLKKL*

>peptide 7 (54 aa)
TQVPPSLSLANPKSRRHPRTQRRFLHFYFYFEGGPILEARQREPRRPPILPVRP*

>peptide 8 (55 aa)
HKYPPLSLSQILSLAVTLARNVAFFTFTFTSREAQFSRPGRGSRGGRQSCPCGRR*

Sequence

>CNT0001914
CACACAAGTACCCCCCTCTCTCTCTCTCGCAAATCCTAAGTCTCGCCGTCACCCTCGCACGCAACGTCGCTTTCTTCACTTTTACTTTTACTTCGAGGGA
GGCCCAATTCTCGAGGCCCGGCAGAGGGAGCCGAGGAGGCCGCCAATCCTGCCCGTGCGGCCGTAGATGAGGAAGTTTAGGGGCTGGGCCGGTGTGGCGC
CCTTGGCTGGGAAGCCCCAACACATATTTCCTACATCTGGAGCTGCTTAATTTTATGATTATTGCAATCTCAACTTAGCTTCTTTGTGGGCCATCTCCTA
GACCGAATGATATGAACCCATTTCTTGGTGCGGCAATGGCTCAGCAAATATTGTGTTATTTCCATTCAGTTATTTGATCAATTCAAGCAGTGAAGGTTCA
AGAAATCCAATAGCAGATAGCAGTCTTCAAGTGCTTCTTGTTCTCATTCATTATCATAAATGTCTTGTGAGTGAGGGCTACTCTGTCCTAAAGAATCAAG
TATCTGCCTCTTCAGATTCTTTACCAAAAGAGAATACATATTTTTCTAACAACCCTTACTGCAGGGCCTTAGAGCGTGCAACTGATTGTGAATTGGATTG
TGTAGATTTAGAGGGTAATGCACACAGTGACCAACTTGTAAAATTGCCTTTTGCACCGTTGTTTGATACCCTTGGCATGTGAGTATCAGGCTACCTGTAT
GTGTGGTTGACAATTGACTTACTGGATCTGTAGCAAACTTACTTTTGTTTATAGTTGAGTTATGCTATTCAAAATAGAATATACATGTTTTGCATATTAT
CATGATAAGATGGTAACTTCTGTTTTTTAAAAAATGAGATGATTAGAACATGTATCAATAATCAGTTGTAGGTGAATGAGTGAATCTTATAATGTCTGAG
TGTTTGTTTCTTATATTTTTTCTGTTCATCCACTTGATAAGTGTCCTTCCTCTTTCTATCTCTTCCCGCCGCATGTAGATCAAGCAAGAATTCTTGGACT
TGTTTCCATGTTGGACTTTTATATACATATGAAGTCATGGGTATTCATGTGGTATCCTAATTTTGTATTTTTATTTTTTAAGAACCACTCAATGAACCAG
GTTGCTATTGCCTGCATTTTCTATTACTTTGCCACTCTATTTCTTTTAGTCACTTCTTTTTGTTCTAATATATAATTCAGAACATTCATGTTTATAATTC
AGATAGTTATATACTTTTCAGTTAGCCTTGTAAGATTTTCATTTTTGGGGAAAAATTTCTGGGTTTATTTGGTTGTTAGTGCATTGTTGTTTTTAGGCCA
TGCCCATGTTCAAGCATACATTGAGTTAAACAGTCAATGCTCATAATAGTTGATCCAAATATTGGCTTCTTGTGTTTACTACTCTAACATATGTTTAGGA
GTTGTAACTTACATCATCAGGGGAAGGATGTTTCTTAAATTTTGATTTGTGATATCTATTTGAGGAGAATAAAACTACCATGCAATGTAATCCATCTCTT
TATAGTGTTGCTTTTCTACCCATTTTGATGTTTCATGGAGGAAATATAGTACCAAAACTCAGAGAACATAAAAGACATTCTCCAGATTTTTGAAGTTTAC
CATAAGCATTATATTGTACTAAGTTTTGTTGAAGGTGGTGCATCATAAGATTTATAGGACTGGTACAGGACTTATTAGTGTGTTGTTACTCCATTCTCCT
AGTCCATTCATGCTAATCAAGTTTCTTTGTGTCTTGATGGAATTGGTTGTAAAGCCTCATACTAGATGAACAAATTTGGTGTTGATTTATTCTGTTGATC
ACACTAGCAACTCTATCCAGCAACATCACAACCAAGAATGTTGTGTCCTATTGAAATTTTAGGCAAAGGGAGCAAAAAAGTACTTGGAATGATTTGCAAT
GGCCCAACCAGGCTTCAGCGTTTGCTCACTCTCCTAGAGACTGGGTCAACCCAAGCAACAAGGTTGACTGCTGCTCGTCAGATAGCAAAATCACACCCTC
AACACTTGACCAGTCTTCTTAAGAAGCTTTGATATGAACAAGGTGCTTGAATTTGGAGCCTTATTAGCATCAGGAGGACAGGAACTAGACAATACATGTC
ACGAAAACAATTGGGTTCTACCAGCTTATCATTTATACCATGCAGATGGTAAGACTATCAAATTTAGCCAAAATACATGAGCAGCATAAATTCTCTTCAT
GAATCAAGTTATGGACTATTAAATTTAATTTAATTAGGTATAATTAGGATTTAACCATTGCACTTTTTTGTTGACCTTATTAATGGCCAGCAGTTATTCA
TGTGTCAATTGTAATTTGCGTGAAATGATCTCATTAATTGTGCACAAGTGTGTGCATATATTATTTGAGAGTTCTCCGTAATTTAATTTGACTTCTTTAA
TTTTACTTCTTGGATAAGATATTTCAAATAACTTACAATATTCCATATGCCTTAATTTCACATATTCAGTCATTGGGGCTTGGCCAAGGTGGGAA