Detailed information on CNT0001916 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0042675, E-value = 8e-07 (A. thaliana)

Expression of CNT0001916

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MLLSTKCIFGDLFLGGIVFFFSKFPHELGNNFIIKIS*

>peptide 2 (30 aa)
MCHTQRHASLENTGAMISTNLRKFQVSKLC*

>peptide 3 (32 aa)
MEDILLIRCRKLRKIQKQLNKEDLNLNGLSEN*

>peptide 4 (61 aa)
KMSPHINLYHVPHTTPCISGKYRSHDLNKSEKISSVKAMLDTFDMIPLEAHKTERKKGACY*

Sequence

>CNT0001916
AAAATGAGTCCTCATATAAACCTGTATCATGTGCCACACACAACGCCATGCATCTCTGGAAAATACAGGAGCCATGATCTCAACAAATCTGAGAAAATTT
CAAGTGTCAAAGCTATGTTAGATACATTTGATATGATCCCTTTAGAAGCTCACAAGACAGAAAGAAAGAAAGGTGCATGTTATTAAGTACTAAGTGCATA
TTTGGGGACTTATTTTTAGGGGGAATAGTTTTTTTCTTTTCAAAATTCCCTCATGAACTTGGCAATAATTTTATCATCAAAATAAGCTAAACTAAACATG
CGCTAAATCTCTTAGGAGTCAATATTTGCTTACGCAGCACATGGTGGCAAATGTGGATCAGAACACCAACCACTTCTTTCCTCAGCTTTCCTGCAAGAGA
TTGACAAATATAGTTTAAGCTAGAACATGGAACAACTATAAAAGAAAAGATTAAGCAGCAATAATTGTTTAATGGAGGATATCCTGCTAATCAGATGTAG
AAAACTGAGGAAAATTCAGAAACAACTCAATAAAGAAGACCTTAATCTAAATGGCCTTTCAGAAAATTGATTTTTGAGTTCAAATGCACAATGGCATTGT
TTGATACATGTAACGGTCCCTTATAACATGAATAGGCTTTATTAATGTTACTGTTGTGGTTGGTGATTTCAATTATAGATCATGGAATTGGCTTAGAACA
AATATGACGAGGTTTGATGTGCCTTTGTATGTACGGTGTATGGAACCTCTTCAATGCTTGAAGATCGTAACATGTGCTGGTATGATATAAGAGCTGTTGT
GATGTAGCAGAAATGACAGTGGTTGTGGAAAACTTGTGCAGGAGAGCTTACACCAGGTTATAGCAGCAACTGGACACAGTTACATGCAGGTTGTTGTGGC
CTCGGGTATGATTTTATCTAGTTGGAATACAGAAGGAAATTAATAGGGTGCTTATGTTGTAATTCTGTTATAGCTGTACTGTGTAATTGAATTTATGTAC
TGTTCTCTGGGTTGGAGTTTTTGACATCTCTTGTGACAAAATTCCAACCAGTTTTTTATAATACATATATAATACACAAAACTAAAACATATAAGAACAT
AATTCACTTACTTATGGACTTCACCACTATCCCTTTTCCTTGTCATCTGCCATGTAAAACTACTACTTGGGTC

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA19G08270.2 Protein of unknown function (DUF707) protein coding CNT0001916 842 312 CDS Cis
GLYMA19G08270.2 Protein of unknown function (DUF707) protein coding CNT0001916 1724 640 CDS Cis
GLYMA19G08270.3 Protein of unknown function (DUF707) protein coding CNT0001916 842 312 CDS Cis
GLYMA19G08270.3 Protein of unknown function (DUF707) protein coding CNT0001916 1724 640 CDS Cis