Detailed information on CNT0001917 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q2R1V8|GME2_ORYSJ, E-value = 1e-19

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001917

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.320000.30500.90.5630000000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.050.10.150.20.250.30.350.40.450.50.550.60.650.70.750.80.850.90.95

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MHCSLLFFAICCNCRTSLALAALFFAICST*

>peptide 2 (30 aa)
HHLKQQLLLLPQTKQEHNTIRYKYMNKFQN*

Sequence

>CNT0001917
CATCACCTTAAGCAGCAGTTATTATTATTACCTCAAACAAAACAAGAACATAACACCATCCGTTACAAATACATGAACAAGTTCCAAAACTAACTTCAAT
AGCTAATCTGTAACCATAGATCTCTACAAAATAGCAACATAAAAGCCTGCCCTTCACTTGGAAATGCATTGTTCACTCTTATTCTTTGCCATCTGCTGCA
ACTGCCGAACATCCCTTGCACTAGCAGCTTTATTCTTTGCCATCTGCAGCACGTAGCGAGCCAAGTTGAACTGGGGCTTGAGTCTGAACCACTTTGGATG
ATCCATAGCCTGATAAATCAACACCTTCTGCCTTCTCTTTCTCAAGCTGCTCTTTGATCCAAAATATGTAATTCTCAGCCCATCCTACAATATGAGAATT
GAGATGCTATGAGTTGTGTTTGTGTTTGGTTAACCAGTTAGAATGGTACAAACAGACATTCACA

lncRNA-RNA interactions

Number of interactions: 10

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA03G40720.1 Uncharacterized protein protein coding CNT0001917 795 455 CDS_UTR Trans
GLYMA09G08620.1 Uncharacterized protein protein coding CNT0001917 125 110 CDS Trans
GLYMA09G15350.1 Uncharacterized protein protein coding CNT0001917 128 98 CDS Trans
GLYMA10G30400.1 Putative uncharacterized protein protein coding CNT0001917 308 183 CDS_UTR Trans
GLYMA10G30400.3 Putative uncharacterized protein protein coding CNT0001917 308 183 CDS_UTR Trans
GLYMA19G43400.2 Uncharacterized protein protein coding CNT0001917 625 236 CDS Cis
GLYMA19G43410.1 Uncharacterized protein protein coding CNT0001917 614 237 CDS_UTR Cis
GLYMA20G36740.1 Uncharacterized protein protein coding CNT0001917 319 189 CDS_UTR Trans
GLYMA20G36740.3 Uncharacterized protein protein coding CNT0001917 319 189 UTR3 Trans
GLYMA20G36740.4 Uncharacterized protein protein coding CNT0001917 319 189 CDS_UTR Trans