Detailed information on CNT0001919 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O82238|NDS5A_ARATH, E-value = 2e-08

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001919

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)9.266.6236.93261.6329.4076.99312.6447.96333.71932.79940.65433.35136.56838.65927.463leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)05101520253035404550556065

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MFVICLDRYSCMFCEPIFYTFDVAGFFSLCNKFRSQLRTANFTISLLSEFGKCL*

>peptide 2 (33 aa)
MFQRRNRIYKEEQRKLRAATRKGQEDGVNEHHH*

>peptide 3 (29 aa)
MWLLRTSQEGRNWTYTSFIYCEKESPNNR*

Sequence

>CNT0001919
CTGTATTGAAAGGAGACATCTGTGGAAGTGTTTAAGCTAGAGTTGAATTTGCAAATTCCCTCTTCTGCTTATATCCACATCAAATGAAGATGAATGTGGC
TTCTAAGAACTTCTCAAGAAGGAAGGAACTGGACTTACACCTCATTTATTTATTGTGAAAAGGAAAGTCCTAATAATAGGTGAATGTTTCAACGACGAAA
CCGGATTTACAAGGAGGAGCAGCGCAAACTAAGGGCTGCTACCAGGAAAGGCCAGGAGGATGGGGTTAATGAACATCATCATTAGAACCTGGAGTTAATT
TTCAATCTAAGCTTCTGAACAATTATTTTGATAAAATGTTTGTGATTTGCTTGGATCGGTATTCCTGCATGTTCTGTGAGCCCATATTTTATACTTTTGA
TGTTGCGGGCTTCTTTTCCCTGTGCAATAAATTCAGAAGTCAACTTAGGACTGCAAATTTCACTATAAGTTTGCTGAGTGAATTTGGTAAATGTCTTTGA
GATGTAAACATGGGTTAAAAGGATTGAAATTCTCTAAATGAAAAAGATCAACAAATTAAAATCTTGATTGTGAGGAAGAGCGTAGGACTACATTTCTAAT
TTTACAAAAAGGGTGGATTCATCAAAATCTTAAGAACAATGGATTAAGGCTAAATCTTCCCATGCTCTTCGTGATTATTATCAAGGATTCTGCTTTATCT
CTCTAATTGAATATTTGAATAGCAATGTGTTTATTATT