Detailed information on CNT0001927 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9FF17|ALG6_ARATH, E-value = 2e-46

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001927

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.4021.1280.3291.7560.1910.240.3760.3530.7870.4720.8550.9340.8070.5510leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.41.51.61.71.81.9

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MNIFPDECIFCTCFFQPSSWQCLRHKYPILEVSRLGLLVLGTFAAVWWPYLYSTQSILEI*

>peptide 2 (46 aa)
MVIFSTTASAWALPLALLLLSSPGMIFMASVLYCLALNHKQGMVAI*

>peptide 3 (141 aa)
VILSPPLILRSSTWTPSFFSLPENWRVTSVFCIIRVCVKGQRRLPRKLLMRWTVLSSDSLIFFPASLYFIILYYNQSSRSRKSELAWHTAVLLLSPCLVL
IDHGHFQYNCISLGFTIGAVAAILSGNDLYGFCSLLSSSKS*

Sequence

>CNT0001927
GTAATTCTCTCTCCGCCACTCATTCTTAGATCTTCCACCTGGACTCCGTCGTTCTTTTCGCTTCCAGAGAATTGGAGGGTCACTTCAGTATTCTGCATAA
TAAGGGTTTGCGTTAAAGGTCAGCGTAGGTTACCTAGAAAACTACTCATGAGGTGGACAGTATTATCATCTGATTCCCTGATATTCTTTCCAGCTTCCCT
GTACTTTATTATCCTTTATTACAATCAATCTTCAAGGAGCCGTAAAAGTGAATTAGCATGGCATACTGCTGTGCTATTGTTAAGCCCTTGTTTGGTCTTA
ATTGATCATGGTCATTTTCAGTACAACTGCATCAGCTTGGGCTTTACCATTGGCGCTGTTGCTGCTATCCTCTCCGGGAATGATCTTTATGGCTTCTGTT
CTTTATTGTCTAGCTCTAAATCATAAACAGGGAATGGTAGCTATATGAATATTTTTCCAGATGAGTGCATATTTTGCACCTGCTTTTTTCAGCCATCTTC
TTGGCAATGCCTGAGACATAAATATCCAATCCTTGAGGTGTCAAGACTGGGGTTGTTGGTTTTAGGAACATTTGCAGCTGTGTGGTGGCCTTATCTTTAT
TCAACACAATCCATTTTGGAGATATGAGAAGGATGTACAAGTTTGGCTCCAAAGAGGACTCTCCCCTTAATAGAGAATAAACCACTCGGACACAGGTGTC
TACGACGTGGAAATCAACATAATGATGATTTGATAATTTT