Detailed information on CNT0001934 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001934

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)14.96716.6514.7828.55512.97518.74220.32911.58718.40940.76739.05834.11415.44813.29814.337leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)02.557.51012.51517.52022.52527.53032.53537.54042.545

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MKHLTVQRGTKRVTGQRRIRKKIKVKATVISGRSIK*

>peptide 2 (34 aa)
MCQDFFFFLVFIWAHVTELLKICSLLGFPSDDCS*

>peptide 3 (64 aa)
MLMILSAYFMYWLFEIGAGICDMFGCLIDLLRCCFLVGFVLAMGALYRNSMMRGAAALCSFPSF*

>peptide 4 (154 aa)
MAASSSSLSASDDSSSRRRRRHHRHRRGRDKDSLKIRKKSKSQSQSRGKRRRRHYHHSSDSYSSSSLSDYSRSESSSDSEHETSHRSKRHKKSDRPKKNK
EKDQSKSHRHKWQKHKVKEVGHFFMPFLLSSIGLFKIVWYSSYLKFLTQVTLKC*

Sequence

>CNT0001934
CTCTAACGTAGGTAAAAGAGAGAAAGAAATAAAAAATTGGCGTGAGTCGGGCCAAGCAAGCTAAGGCAAACCCTCGTTGGCAAGTTTGTGATGGCGGCCT
CTTCTTCCTCTCTCTCTGCCTCCGACGACTCTTCTTCTCGCCGTCGCAGGCGCCACCACCGCCATCGCCGAGGCCGCGATAAGGACTCTCTCAAGATTCG
AAAGAAGAGCAAGTCCCAATCCCAATCCCGCGGAAAACGACGCCGTAGGCATTACCACCACTCTTCCGATTCCTATTCTTCATCCTCCCTCTCTGATTAC
TCCAGAAGTGAAAGTTCTTCTGATAGTGAACATGAAACATCTCACCGTTCAAAGAGGCACAAAAAGAGTGACAGGCCAAAGAAGAATAAGGAAAAAGATC
AAAGTAAAAGCCACCGTCATAAGTGGCAGAAGCATAAAGTAAAAGAGGTAGGTCACTTTTTCATGCCATTTTTGTTATCTTCCATAGGCTTGTTCAAAAT
AGTTTGGTATTCTTCGTATTTAAAGTTTTTAACTCAAGTTACCTTGAAATGTTGACTATGTGCGAGGCGTCGTTTCATTTAAATCTTCAGATTGTTCATA
AACTTGATTCAGCATGTTAATACTTATTACTACTGGAAGTTTTGCTGCATGGATTCTTTTCTAAATCTAAGATGCACCCATGTAATTTTGTATGATTCTA
TCATCTTCTGCATAGTTTGAAAACACTGGTTTGAATTTGATTTTGACATCATTGATCCTGAACTAATAATGCATACCATAAAACAGCAAATTATTATTTA
GCTGCAAAGTTGCTTACTTATTTCCATGCGCAACGTTTTTTACTTTCTAGTCTGAGATGCTTATGATACTTTCTGCCTATTTTATGTATTGGCTCTTTGA
AATTGGAGCTGGGATCTGTGACATGTTTGGGTGCTTGATTGACTTGCTTCGATGTTGTTTCTTGGTGGGGTTTGTCCTGGCAATGGGAGCTTTATATAGA
AACAGCATGATGAGAGGAGCAGCAGCCCTGTGCAGCTTTCCAAGTTTTTAGGGCGTGACAAAGATGATGGTGTCCGTCGCAGTGCTGTATCTGGCAAGAA
GATTCTTCTGAAACTTGAGAAAACAAAGGAAGATAAGGTAGCTGAAAGCAAGAGAAATGAACTGCTGAACTTTTTAAATGCTAGTTTTGATTAGATTTGA
TAGGGTACAACAAAATCTGCAAAGAACCAAATTTACTTACGTGGGTGCATAAATTATTTTTCCATTATAAGAACCGGGCAGCCTGCCATTTCCTTGCGGA
AGAGGAGGGGGATACCATAATATTATGCGTACCATTGAAAGACATGTGTGGTTCTCAATCAGTGGATTTCTCTTTTACGGAATATGTTATGAGCTTTTGT
AGAATGAGGAGTTTTTGACCCAACAGATTCCATACATGGTATTTTGAGATTGGGCAATCATTGTGTTATGTGCCAAGACTTTTTTTTTTTTCTTGTGTTT
ATTTGGGCACATGTGACTGAATTATTAAAAATTTGTTCCCTTCTTGGTTTCCCCTCCGATGATTGTTCTTAAAATAGGTTTGGATTGAATTGAGTCAACG
TAAAGATCTTAGGTTCAATTCTTGTTCATTGCCCGTTATTGATATATATCATTTGTAAGTACCAATATGATTCCTTGTGACCTTGGAATGGAGCAACCTC
TCCTTTCTATACTATTGCTTACCCTACAACAAATAATTATCTTCAGG