Detailed information on CNT0001935 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001935

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)9.4610.1978.7385.7338.74912.49113.5167.66512.00227.1425.93122.59510.0778.7558.722leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)024681012141618202224262830

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVSSKCLMLINCVPCRGCLIILHIAYVSDFKNL*

>peptide 2 (30 aa)
MPFLLSSIGLFKIVWYSSYLKFLTQVTLKC*

>peptide 3 (81 aa)
MAASSSSLSASDDSSSRRRRRHHRHRRGRDKDSLKIRKKSKSQSQSRGKRRRRHYHHSSDSYSSSSLSDYSRFHIYPSHNS*

>peptide 4 (37 aa)
MFPFQHLGFSLMESVLFYFIPLLFLAIRGWKRCETKS*

>peptide 5 (64 aa)
MLMILSAYFMYWLFEIGAGICDMFGCLIDLLRCCFLVGFVLAMGALYRNSMMRGAAALCSFPSF*

>peptide 6 (34 aa)
MCQDFFFFLVFIWAHVTELLKICSLLGFPSDDCS*

Sequence

>CNT0001935
CTCTAACGTAGGTAAAAGAGAGAAAGAAATAAAAAATTGGCGTGAGTCGGGCCAAGCAAGCTAAGGCAAACCCTCGTTGGCAAGTTTGTGATGGCGGCCT
CTTCTTCCTCTCTCTCTGCCTCCGACGACTCTTCTTCTCGCCGTCGCAGGCGCCACCACCGCCATCGCCGAGGCCGCGATAAGGACTCTCTCAAGATTCG
AAAGAAGAGCAAGTCCCAATCCCAATCCCGCGGAAAACGACGCCGTAGGCATTACCACCACTCTTCCGATTCCTATTCTTCATCCTCCCTCTCTGATTAC
TCCAGGTTCCATATCTATCCCTCTCATAACTCATAACTCACGCATTTCTTTTTATTATTCTATTTCGTATTATCATGTACATGCTTTGCTTCAATAGTTG
ATTCAATACAATTTATGAATTTTAGAATTCTATTGGTTTTGAGTTCTCGTATCCTTTAAGATCCATGAAAATAACATAGTTGATTCAATATTCACCGTCT
CAGAATGATTAATTACTTTATAATTAGTAGAAAAATATAATTCATTATTTCCGACCATTGTAAGGGAGGCCGAGGCACACGGTTGTAAAAGAAGTAGTTT
ATTCAATCTTGTTCTCTGTCTTAGGTACCAGGAGATGTTTATTACGTAGAATTGATATGTACTGAATTGGAGAATCGGATTAATGTTCCCGTTCCAACAT
TTGGGTTTCTCACTTATGGAATCTGTTTTGTTCTATTTCATTCCGTTATTATTTTTGGCGATTCGAGGTTGGAAGAGATGTGAAACGAAATCATAATTTA
TAACTGATGGAAATTTATTTGAAAATAGATTTTGATAACACTGACCTTTGACTGAGCAATCCTCAGTCTCATTTGCCGTGCATCCTTTCCCCCTTTACTA
TGGATTTGGAAACATGGTTTCTTCAAAATGTTTAATGTTGATAAATTGTGTGCCTTGTAGAGGTTGTCTAATCATTTTGCATATTGCATATGTTTCTGAT
TTCAAAAACTTGTAGCAATACATGTTGGTGATTTAATAAGTGGATTAATCTGGCTTTATCATAACACTTTGTTCATCTTTTCACTTCAGAAGTGAAAGTT
CTTCTGATAGTGAACATGAAACATCTCACCGTTCAAAGAGGCACAAAAAGAGTGACAGGCCAAAGAAGGTGACTTGTTAGTAATACAATTTTTCTTAGTT
TACAATCTTCTCCATTTACCTTACATCTCCCCTTCACCCTCCAGAATAAGGAAAAAGATCAAAGTAAAAGCCACCGTCATAAGTGGCAGAAGCATAAAGT
AAAAGAGGTAGGTCACTTTTTCATGCCATTTTTGTTATCTTCCATAGGCTTGTTCAAAATAGTTTGGTATTCTTCGTATTTAAAGTTTTTAACTCAAGTT
ACCTTGAAATGTTGACTATGTGCGAGGCGTCGTTTCATTTAAATCTTCAGATTGTTCATAAACTTGATTCAGCATGTTAATACTTATTACTACTGGAAGT
TTTGCTGCATGGATTCTTTTCTAAATCTAAGATGCACCCATGTAATTTTGTATGATTCTATCATCTTCTGCATAGTTTGAAAACACTGGTTTGAATTTGA
TTTTGACATCATTGATCCTGAACTAATAATGCATACCATAAAACAGCAAATTATTATTTAGCTGCAAAGTTGCTTACTTATTTCCATGCGCAACGTTTTT
TACTTTCTAGTCTGAGATGCTTATGATACTTTCTGCCTATTTTATGTATTGGCTCTTTGAAATTGGAGCTGGGATCTGTGACATGTTTGGGTGCTTGATT
GACTTGCTTCGATGTTGTTTCTTGGTGGGGTTTGTCCTGGCAATGGGAGCTTTATATAGAAACAGCATGATGAGAGGAGCAGCAGCCCTGTGCAGCTTTC
CAAGTTTTTAGGGCGTGACAAAGATGATGGTGTCCGTCGCAGTGCTGTATCTGGCAAGAAGATTCTTCTGAAACTTGAGAAAACAAAGGAAGATAAGGTA
GCTGAAAGCAAGAGAAATGAACTGCTGAACTTTTTAAATGCTAGTTTTGATTAGATTTGATAGGGTACAACAAAATCTGCAAAGAACCAAATTTACTTAC
GTGGGTGCATAAATTATTTTTCCATTATAAGAACCGGGCAGCCTGCCATTTCCTTGCGGAAGAGGAGGGGGATACCATAATATTATGCGTACCATTGAAA
GACATGTGTGGTTCTCAATCAGTGGATTTCTCTTTTACGGAATATGTTATGAGCTTTTGTAGAATGAGGAGTTTTTGACCCAACAGATTCCATACATGGT
ATTTTGAGATTGGGCAATCATTGTGTTATGTGCCAAGACTTTTTTTTTTTTCTTGTGTTTATTTGGGCACATGTGACTGAATTATTAAAAATTTGTTCCC
TTCTTGGTTTCCCCTCCGATGATTGTTCTTAAAATAGGTTTGGATTGAATTGAGTCAACGTAAAGATCTTAGGTTCAATTCTTGTTCATTGCCCGTTATT
GATATATATCATTTGTAAGTACCAATATGATTCCTTGTGACCTTGGAATGGAGCAACCTCTCCTTTCTATACTATTGCTTACCCTACAACAAATAATTAT
CTTCAGG