Detailed information on CNT0001952 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001952

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.6542.1721.4800.867.2046.4847.5351.1781.7671.1530.70.84600.334leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.58

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MMKTTSCSHDHNRHIIHGPHVNSNNTMTPF*

>peptide 2 (43 aa)
MELMQQVKGNYSDSREEEEAAAEIITITREPESSNKEQKVVQL*

Sequence

>CNT0001952
AATTAACCAATATCATTGCTCCATATATTAATATTTTTCTGCTTTGACAATAAAACGAGAGTGCAAGGGCAAATTTAACACAGTTAGGTTAAGCTCATTG
CTTCTGGAACAACTGGCCTTTTGGTCTCAACCCGGAAGCATATGTACTGTACAGATTATACCAAATATGATGAAAACGACAAGTTGCTCACATGACCACA
ATAGGCACATTATTCATGGCCCCCACGTCAACAGTAACAATACCATGACCCCTTTTTGAATCCTCCATATTCATTCCAATATGGCTTGTCTTTCTTTAGG
GTTTGGATTTGGAGGCTTGTGGTCAACTAAGAAGGCACCAACTGTTTTAATTTTTGTGTACTAAGAGCCTGTTTTTGTTTTTCTGTAGAGCCTCAGCAAT
CTGGCCTGAATTCAAGGTAGGTCAGCCACAATTAACTGATCCATGGAGTTGATGCAACAAGTTAAAGGTAACTATTCTGATAGCAGGGAGGAAGAGGAGG
CTGCAGCAGAGATTATCACAATCACAAGGGAACCAGAAAGCAGCAATAAGGAGCAGAAAGTTGTACAGCTGTAAAATGCAGTCGCCTTCTTGTCTGGATC
AGCACTGCTCACGAACACGTGGTTTTGGATAAATAGATGTGCATATGAGGGGATTTCTTTCCCCTTCTCCCAAGGGTTAAAAGAAAGGCTAGCGGAAAAA
TAAAAGCAACAGCCAACCACACTTTCTTAACCGAGGATAAATTAAAGATCTGTTGCTCGACATTTCATCAGTGCGATTTAGGAACATTTAGCCAAGTAGG
TATGATTTTTCAATATGTATACATATGCGCTTTTTCTTCAGGGATGACAAGGTTCCGTCACTAGCATTTAGGTTATGAAATTATATATTGCTTGCATTAA
TCATCAATATATAATTGCACTCAAATATATGTTTAGTCTAAAATCCAGGAGTAAAATGTAATTGCCTCGTATATATATATATATATAT