Detailed information on CNT0001953 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001953

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.590.4730.1210.6450.1410.1770.1380.3894.625.084.3963.2923.1993.6391.471leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.54.7555.255.5

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MASSYSCVNCNLREMISLIVHKCVHILFESSP*

>peptide 2 (47 aa)
MICNGPTRLQRLLTLLETGSTQATRLTAARQIAKSHPQHLTSLLKKL*

>peptide 3 (48 aa)
MNKVLEFGALLASGGQELDNTCHENNWVLPAYHLYHADGKTIKFSQNT*

Sequence

>CNT0001953
ATTTCCTACATCTGGAGCTGCTTAATTTTATGATTATTGCAATCTCAACTTAGCTTCTTTGTGGGCCATCTCCTAGACCGAATGATATGAACCCATTTCT
TGGTGCGGCAATGGCTCAGCAAATATTGTGTTATTTCCATTCAGTTATTTGATCAATTCAAGCAGTGAAGGTTCAAGAAATCCAATAGCAGATAGCAGTC
TTCAAGTGCTTCTTGTTCTCATTCATTATCATAAATGTCTTGTGAGTGAGGGCTACTCTGTCCTAAAGAATCAAGTATCTGCCTCTTCAGATTCTTTACC
AAAAGAGAATACATATTTTTCTAACAACCCTTACTGCAGGGCCTTAGAGCGTGCAACTGATTGTGAATATTTTAGGCAAAGGGAGCAAAAAAGTACTTGG
AATGATTTGCAATGGCCCAACCAGGCTTCAGCGTTTGCTCACTCTCCTAGAGACTGGGTCAACCCAAGCAACAAGGTTGACTGCTGCTCGTCAGATAGCA
AAATCACACCCTCAACACTTGACCAGTCTTCTTAAGAAGCTTTGATATGAACAAGGTGCTTGAATTTGGAGCCTTATTAGCATCAGGAGGACAGGAACTA
GACAATACATGTCACGAAAACAATTGGGTTCTACCAGCTTATCATTTATACCATGCAGATGGTAAGACTATCAAATTTAGCCAAAATACATGAGCAGCAT
AAATTCTCTTCATGAATCAAGTTATGGACTATTAAATTTAATTTAATTAGGTATAATTAGGATTTAACCATTGCACTTTTTTGTTGACCTTATTAATGGC
CAGCAGTTATTCATGTGTCAATTGTAATTTGCGTGAAATGATCTCATTAATTGTGCACAAGTGTGTGCATATATTATTTGAGAGTTCTCCGTAATTTAAT
TTGACTTCTTTAATTTTACTTCTTGGATAAGATATTTCAAATAACTTACAATATTCCATATGCCTTAATTTCACATATTCAGTCATTGGGGCTTGGCCAA
GGTGGGAA