Detailed information on CNT0001962 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001962

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MLSFLHFSFKYLSCCFIDFLIQCCKSPNSSPKKIEVTIFIGLCTVLY*

>peptide 2 (57 aa)
MLQIAKLLTQKDRSYNFHWSVYGVILRASPGVAVKLCLGDLLVMGSNPETASLHMQG*

>peptide 3 (36 aa)
MLLCFLFYISLLNICHVVLLISLFNAANRQTPHPKR*

Sequence

>CNT0001962
TGTTGACAACTATGGTTCCAGAAAATTTAAGCTTCCAATGGACACTTACACCTTAAGTTCCAGATAAACTTCTTTTAGATGTGTCCATTTTGCCATATAT
GCTACTATGCTTTCTTTTTTACATTTCTCTTTTAAATATTTGTCATGTTGTTTTATTGATTTCCTTATTCAATGCTGCAAATCGCCAAACTCCTCACCCA
AAAAGATAGAAGTTACAATTTTCATTGGTCTGTGTACGGTGTTATACTGAGGGCGAGCCCTGGTGTAGCGGTAAAGTTGTGCCTTGGTGACTTGTTGGTC
ATGGGTTCGAATCCGGAAACAGCCTCTTTGCATATGCAAGGGTAAGGTTGCGTACAACATCCCTCCCCCATACCTTCGCATAACGAAGAGCCTCTGAACA
ATGGGG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA11G08975.1 Uncharacterized protein protein coding CNT0001962 450 158 CDS Trans
GLYMA16G23930.2 Uncharacterized protein protein coding CNT0001962 453 158 CDS Trans