Detailed information on CNT0001964 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q54ES6|RPC19_DICDI, E-value = 1e-07

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001964

Peptides detected in this lncRNA

>peptide 1 (51 aa)
WWYMCTRTSDVKKSNPVHKGPTKWSLGRVDICTTLSPLVERLFLRFKPMTF*

Sequence

>CNT0001964
TGGTGGTATATGTGTACAAGAACTAGTGATGTAAAAAAGAGCAATCCAGTGCATAAAGGACCCACCAAATGGAGTTTGGGGAGGGTGGATATATGCACAA
CCTTATCCCCTCTAGTAGAGAGACTGTTTCTAAGATTTAAACCCATGACCTTTTAGGCTTTAGGTCAGAAGGCAGCAGCCTATAGTCACATCAAGGAGAG
CTCTTTATTTGTGATTTTTAGGGATCAACACTGGACTAGAAACTAAAGAAAGTTAATTTATTATTATAATTACCTGTTGTCTGCACTCTGATATTAACTC
GATTATCTGAAGGATGAGGAATGCTGTACCCACAAAATGTCACTCTTGGACTGCAAAACAATATTAAGACCTCA

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA19G06080.1 Uncharacterized protein protein coding CNT0001964 972 351 CDS Cis