Detailed information on CNT0001968 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O82238|NDS5A_ARATH, E-value = 1e-43

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0022944, E-value = 4e-17 (A. trichopoda)

Expression of CNT0001968

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)14.63812.82611.86466.96522.94414.10716.08813.90363.61653.50869.10362.01362.74939.69640.308leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)051015202530354045505560657075

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MASGWGITGNKGRCYDFWMDFSECMSRCREPKDCAFLREDYLECLHHSKENLAMDCEL*

>peptide 2 (54 aa)
MFVICLDRYSCMFCEPIFYTFDVAGFFSLCNKFRSQLRTANFTISLLSEFGKCL*

Sequence

>CNT0001968
TTTTGTATAGCTATTAAATATGAAATATTCCTCTTTTAGGAGCAATTTGTCACATCAACGAGAGAGCTGAGGAGAAATTGGGTGTAGAAACAGCGAAAGA
GAAAGAGAGAGAGAGAGAGAGATGGCGTCGGGCTGGGGAATTACCGGAAACAAAGGTCGCTGCTACGATTTCTGGATGGATTTCAGCGAGTGCATGTCTC
GCTGCCGTGAGCCCAAGGACTGTGCTTTTCTCCGCGAAGACTACCTCGAGTGCCTCCACCATTCCAAAGAGAATTTGGCCATGGATTGTGAACTTTGAAT
TACAACTGGACTTTCAATATTTGATTTGACTTTTCAACGACGAAACCGGATTTACAAGGAGGAGCAGCGCAAACTAAGGGCTGCTACCAGGAAAGGCCAG
GAGGATGGGGTTAATGAACATCATCATTAGAACCTGGAGTTAATTTTCAATCTAAGCTTCTGAACAATTATTTTGATAAAATGTTTGTGATTTGCTTGGA
TCGGTATTCCTGCATGTTCTGTGAGCCCATATTTTATACTTTTGATGTTGCGGGCTTCTTTTCCCTGTGCAATAAATTCAGAAGTCAACTTAGGACTGCA
AATTTCACTATAAGTTTGCTGAGTGAATTTGGTAAATGTCTTTGAGATGTAAACATGGGTTAAAAGGATTGAAATTCTCTAAATGAAAAAGATCAACAAA
TTAAAATCTTGATTGTGAGGAAGAGCGTAGGACTACATTTCTAATTTTACAAAAAGGGTGGATTCATCAAAATCTTAAGAACAATGGATTAAGGCTAAAT
CTTCCCATGCTCTTCGTGATTATTATCAAGGATTCTGCTTTATCTCTCTAATTGAATATTTGAATAGCAATGTGTTTATTATT