Detailed information on CNT0001979 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001979

Peptides detected in this lncRNA

>peptide 1 (60 aa)
LSVIAESGGIGSCGGLNPIMSGHNPLPIDIICIISFHIFNTFIHSNSNICKLRPSLGKHI*

Sequence

>CNT0001979
GTTGTCTGTGATAGCAGAAAGTGGTGGAATAGGTAGCTGTGGTGGCCTGAATCCCATCATGAGTGGCCATAACCCACTTCCCATTGACATTATCTGCATC
ATTTCATTTCATATATTTAACACATTCATTCATTCAAATTCTAATATTTGTAAATTAAGGCCAAGTCTAGGAAAACATATATAATTTGTACAACAGAAAT
GTTGGACCTGAAAATTTGCCTGTAACTGAAGCTTTAGGGTCTTCAGATAGTCGATGGCATCGTCTAGCATTGATGCTTTGTCCACCTAGA

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA03G38391.1 Uncharacterized protein protein coding CNT0001979 366 252 CDS Trans
GLYMA19G40980.1 Uncharacterized protein protein coding CNT0001979 800 290 CDS Cis