Detailed information on CNT0001990 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9S834|CLPP5_ARATH, E-value = 4e-34

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001990

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.2761.4792.3250.621.8931.8680.931.1221.8053.1092.8993.4312.0514.6671.73leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.54.755

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLMNFGRLRGVHVREFGLSENSTLWGSCR*

>peptide 2 (56 aa)
MSNIIVAQLLYLDAIDPNKDIVMYVNSLGGSVAAVWVPFCLAQGLKEIDIACQIQG*

>peptide 3 (42 aa)
MGAILLSAGTKGNRYSLPNSRIMIHQPLGGAQGGQTDIDIQV*

>peptide 4 (58 aa)
YISSFFIKLKQAKQIVKMANAPCLRCSSLALHCSTHTSSSSHSQSLSLSSHTSRLSWE*

Sequence

>CNT0001990
ATTATATTAGTAGCTTCTTCATAAAATTGAAGCAAGCAAAGCAAATAGTAAAAATGGCGAACGCACCCTGCCTTCGTTGCAGCTCTCTTGCTCTTCACTG
CTCAACGCACACTTCTTCTTCCTCTCACTCTCAGAGCCTTTCTCTTTCTTCACACACTTCTCGCCTCTCCTGGGAATAAATATAGTACTAAGAAATCTCC
TGGGAAGGTGAAGGCCGTGTATGCTAATGAATTTTGGGCGCCTGAGAGGAGTTCACGTCAGGGAATTTGGTCTATCAGAGAATAGTACGTTGTGGGGGAG
CTGTAGATGATGATATGTCTAACATCATAGTTGCCCAGCTTCTTTACCTTGATGCCATCGATCCTAACAAGGATATTGTCATGTACGTAAATTCTCTGGG
AGGATCAGTTGCAGCTGTATGGGTGCCATTCTGCTTAGCGCAGGGACTAAAGGAAATAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAACCGC
TTGGTGGAGCTCAAGGAGGACAAACTGACATAGATATACAGGTATAGGCTCCATTTTCATTTTTCCACCTTATTTTTTTACATAAACATCTTTTTTTGTT
TCTAATAGTTTATATACTATGATCATTTGAAATTAAAGCATGTCTAGGTATTTGAAGCCGAGTAAGTGTTCTGGTAGAAAGACCCAATTTCTTTTTTAAT
TGCGCTTGATGAAATTCCAAAATAGAAGTGCATTTTGTTTATGTAGCAAATGGACCAAATTGGTCCTTAGCAGTATTTAAGTTCTGATGTTTTCAATCAG
AAATGACTTGACACTGTGCCAGAGTTATTCTCTTTGTGACAGCTCACTTTAAATTACAATTTACAACTCTGAGGTTTGTTCCTGTGGTTCTAGTACAATA
AGCTAAAATGCTGAGTATTGGATTAAGTTGCTGGTTACATCTTGCTCTTGATTATCTTATTTTGAGAAAGTCTCTTGGAATTGAAAAATGAAAAACTTGG
GTCTGTTCAATCAGTAGTATAGTTTAATGCAATTTTTGCATTTTCACC