Detailed information on CNT0001999 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001999

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)4.3442.9953.7281.4840.9060.4881.2721.0141.7283.5623.0652.5272.3461.8621.204leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.54.75

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MKFSWLIIRKLHMQRKHFRCVNCICTNYSSCDGW*

>peptide 2 (74 aa)
MGHVAKSQISCLELAEPSIRDAFQSCVEQGAHRIIVSPFFLFPGRHWSQEFGSFGETTLNTNCTMQNSYLVPLA*

>peptide 3 (34 aa)
MLVKSLSPYSHAFSSVVLVAVFLQVLEQTQVGFP*

>peptide 4 (38 aa)
MLFNLALNKVLIALLLVPFFSFLGGIGVRNLEVSERQH*

>peptide 5 (74 aa)
MHQETRFFKVKSLYASKIEVQDYKLLCLADVEVRDQKFTLVGILGSWWPILHLPFWEAFSFFRNRIGSILVKTT*

>peptide 6 (51 aa)
MSIYFAGCCCSLSLFMWMDNQNEICPLCILLFILILITFPQIENLKMDYCF*

>peptide 7 (34 aa)
MSQICKHLYLCKNVTSQHSVTAPILPLPLFDILN*

>peptide 8 (40 aa)
MVSSEIECQYILQVVVVLLVYLCGWTIRTKFVPCVYYYLF*

>peptide 9 (39 aa)
MGFGDYMFTAVAVSVAVINVSIVFECFADASHSWYPTIY*

Sequence

>CNT0001999
GTGACTTGTTAATTTGGTTTTTGGTTGAACAAAAAATGACAGATTCTGAATTCCAACTTTGAGTTTATTGTTTTGTTATAGTTCAATGTTTAAGTTATAG
AAATAACTTTGATGAACTGCAGTGTTCACGCTTGAATTTGTGCATTTGATTTGTACTATTTGGTTTTCTGGACTCTAGGGTTTGATTGTGCATATGGGTT
TTGGTGATTACATGTTTACAGCAGTGGCAGTTTCAGTGGCTGTCATCAACGTGAGCATTGTTTTCGAGTGTTTTGCAGATGCGAGCCATAGTTGGTATCC
TACAATTTATTAATAAGTTGGTTTTTTATTTTGATGTAAAGGATGGTGAGTTCTGAGATTGAATGTCAATATATTTTGCAGGTTGTTGTTGTTCTCTTAG
TTTATTTATGTGGATGGACAATCAGAACGAAATTTGTCCCTTGTGTATATTATTATTTATTTTGATTTTAATTACTTTTCCACAAATTGAAAACCTAAAA
ATGGATTATTGTTTTTGAGCTAGATGCGGCTGTGTCCCATTGTCCTTTTTTTTAATAGACCATTGCGGCCATTGGTTTGCTAATCATTTGCAGGATCACG
TTTTCTGATATCAGTTGGTGGAAACCAGAAATTGTGGGTAGAGTTGGATAGGAACGGGGCAAAACAGAACTATAGTATCCCGTCTCTCTTGAAAGAAGTG
GTGTTGACTTTCTCGTAATCAGTGATGCTGGTGAAGTCTCTATCACCTTATTCTCATGCCTTCTCAAGCGTTGTTCTTGTTGCAGTTTTTCTGCAAGTTT
TGGAACAAACCCAAGTTGGGTTCCCTTAAAGTCCTCAAATAGCCTCTGCTGTTCCTCCAAGCCTAGAAATTTAAGCAGATTTTTATGTCTGAGCACTCAA
AATGGTGGTGGCTTCAGAGAAAACTCTGGTGAAGTTGGACGTGGAGATGCAGTGATAATTGTGGATCATGGGTCACGTCGCAAAGAGTCAAATCTCATGC
TTAGAATTAGCAGAACCATCAATAAGAGATGCTTTTCAATCTTGCGTTGAACAAGGTGCTCATCGCATTATTGTTAGTCCCTTTTTTCTCTTTCCTGGGA
GGCATTGGAGTCAGGAATTTGGAAGTTTCGGAGAGACAACATTGAATACGAATTGTACAATGCAAAACTCGTACTTGGTTCCATTAGCTTGAGCCTGGAG
ATGAAGTTTTCTTGGCTTATTATTAGGAAGTTACATATGCAGCGGAAGCATTTTAGGTGTGTCAATTGCATCTGCACCAATTATAGCTCATGCGATGGAT
GGTGAGCTGCATATCTGATTGCTGGGGATGCATTGGTGGATGATCATGAATCACAGGACCTTTCAGAGGAGGAAATAAATGTGCATCACTTGTTGAGATT
GGCTAGGAAACTTTGGCTGCCTGCTTTTTTCTTTCTTACCGTTTGTCAAACTTGGACGACTCAATTACAAATATTATTCATTAAACTTACTCTATTCCTC
CTCAGTACAAAGCCCAACCCTTTCTCTGTCTATGTATTTGTTGATAAGTTGTGCCAACGATATATGCACCAAGAAACTCGATTCTTTAAAGTAAAGTCAC
TTTATGCCAGCAAAATCGAAGTGCAGGACTATAAGCTTCTTTGCTTGGCTGATGTTGAAGTGAGAGATCAAAAGTTCACTTTGGTTGGAATTCTTGGTAG
TTGGTGGCCTATACTGCATTTGCCATTTTGGGAAGCATTCTCTTTTTTCAGAAATAGAATTGGAAGCATCTTGGTGAAAACAACATAACAAGGGAGTTGG
GCCTCTGTTGGTTTTGTCCCTTTTGGAGCTTCAACTAAATCATGTTATTCATTGAAGATACCATCCCAAAAGTGTTATGCATAGAAGAAGAAAATAAGGG
GCAGGAAATGAGACAGGACTGATTATTACTTGCAAATAAAGTAGCATTTCAAATACTAACTGCCTAGGCTATAAGGTTATCCCTCTCTTGTTTGATGAGT
CAAATATGCAAACATTTATATCTTTGTAAAAATGTGACATCTCAACATTCTGTCACAGCCCCTATTCTTCCTCTGCCACTTTTTGATATTTTAAATTAAT
CGTTAGTATTGAAGTTTAGTTTGTTTGAAAATAGACTTAAATATGTTTTTGTTCATGTAAGTTTGTATTTTTTTAATTTTGGTCCTGGT