Detailed information on CNT0002000 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002000

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.6723.0813.4222.190.8760.71.1741.2471.3083.43.1292.1752.4822.291.296leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)012340.250.50.751.251.51.752.252.52.753.253.53.75

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MLFNLALNKVLIALLLVPFFSFLGGIGVRKLHMQRKHFRCVNCICTNYSSCDGCWGCIGG*

>peptide 2 (157 aa)
MDAGDALVDDHESQDLSEEEINVHHLLRLARKLWLPAFFFLTVCQTWTTQLQILFIKLTLFLLSTKPNPFSVYVFVDKLCQRYMHQETRFFKVKSLYASK
IEVQDYKLLCLADVEVRDQKFTLVGILGSWWPILHLPFWEAFSFFRNRIGSILVKTT*

>peptide 3 (170 aa)
MLVKSLSPYSHAFSSFSASFGTNPSWVPLKSSNSLCCSSKPRNLSRFLCLSTQNGGGFRENSGEVGRGDAVIIVDHGSRRKESNLMLSKLNPSVLCFITV
FVLTPFIFLFFGRGVGVCVEPAHMELAEPSIRDAFQSCVEQGAHRIIVSPFFLFPGRHWSQEVTYAAEAF*

>peptide 4 (30 aa)
ILQVVVVLLVYLCGWTIRTKFVPCVYYYLF*

>peptide 5 (48 aa)
YFAGCCCSLSLFMWMDNQNEICPLCILLFILILITFPQIENLKMDYCF*

>peptide 6 (34 aa)
MSQICKHLYLCKNVTSQHSVTAPILPLPLFDILN*

Sequence

>CNT0002000
ATATTTTGCAGGTTGTTGTTGTTCTCTTAGTTTATTTATGTGGATGGACAATCAGAACGAAATTTGTCCCTTGTGTATATTATTATTTATTTTGATTTTA
ATTACTTTTCCACAAATTGAAAACCTAAAAATGGATTATTGTTTTTGAGCTAGATGCGGCTGTGTCCCATTGTCCTTTTTTTTAATAGACCATTGCGGCC
ATTGGTTTGCTAATCATTTGCAGGATCACGTTTTCTGATATCAGTTGGTGGAAACCAGAAATTGTGGGTAGAGTTGGATAGGAACGGGGCAAAACAGAAC
TATAGTATCCCGTCTCTCTTGAAAGAAGTGGTGTTGACTTTCTCGTAATCAGTGATGCTGGTGAAGTCTCTATCACCTTATTCTCATGCCTTCTCAAGTT
TTTCTGCAAGTTTTGGAACAAACCCAAGTTGGGTTCCCTTAAAGTCCTCAAATAGCCTCTGCTGTTCCTCCAAGCCTAGAAATTTAAGCAGATTTTTATG
TCTGAGCACTCAAAATGGTGGTGGCTTCAGAGAAAACTCTGGTGAAGTTGGACGTGGAGATGCAGTGATAATTGTGGATCATGGGTCACGTCGCAAAGAG
TCAAATCTCATGCTTAGTAAGCTAAACCCATCCGTTTTGTGTTTTATCACTGTTTTTGTATTAACTCCTTTTATTTTTTTATTTTTTGGACGGGGGGTGG
GGGTGTGTGTGGAGCCTGCTCATATGGAATTAGCAGAACCATCAATAAGAGATGCTTTTCAATCTTGCGTTGAACAAGGTGCTCATCGCATTATTGTTAG
TCCCTTTTTTCTCTTTCCTGGGAGGCATTGGAGTCAGGAAGTTACATATGCAGCGGAAGCATTTTAGGTGTGTCAATTGCATCTGCACCAATTATAGCTC
ATGCGATGGATGCTGGGGATGCATTGGTGGATGATCATGAATCACAGGACCTTTCAGAGGAGGAAATAAATGTGCATCACTTGTTGAGATTGGCTAGGAA
ACTTTGGCTGCCTGCTTTTTTCTTTCTTACCGTTTGTCAAACTTGGACGACTCAATTACAAATATTATTCATTAAACTTACTCTATTCCTCCTCAGTACA
AAGCCCAACCCTTTCTCTGTCTATGTATTTGTTGATAAGTTGTGCCAACGATATATGCACCAAGAAACTCGATTCTTTAAAGTAAAGTCACTTTATGCCA
GCAAAATCGAAGTGCAGGACTATAAGCTTCTTTGCTTGGCTGATGTTGAAGTGAGAGATCAAAAGTTCACTTTGGTTGGAATTCTTGGTAGTTGGTGGCC
TATACTGCATTTGCCATTTTGGGAAGCATTCTCTTTTTTCAGAAATAGAATTGGAAGCATCTTGGTGAAAACAACATAACAAGGGAGTTGGGCCTCTGTT
GGTTTTGTCCCTTTTGGAGCTTCAACTAAATCATGTTATTCATTGAAGATACCATCCCAAAAGTGTTATGCATAGAAGAAGAAAATAAGGGGCAGGAAAT
GAGACAGGACTGATTATTACTTGCAAATAAAGTAGCATTTCAAATACTAACTGCCTAGGCTATAAGGTTATCCCTCTCTTGTTTGATGAGTCAAATATGC
AAACATTTATATCTTTGTAAAAATGTGACATCTCAACATTCTGTCACAGCCCCTATTCTTCCTCTGCCACTTTTTGATATTTTAAATTAATCGTTAGTAT
TGAAGTTTAGTTTGTTTGAAAATAGACTTAAATATGTTTTTGTTCATGTAAGTTTGTATTTTTTTAATTTTGGTCCTGGT