Detailed information on CNT0002001 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002001

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.5452.7812.7771.7230.6760.4721.1821.0391.8523.7643.1552.3462.4062.1611.136leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.754

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MMPLSQVFYCDQVNRSHFRELGLCWFCPFWSFN*

>peptide 2 (38 aa)
MYFSFSVYFLSNCPQCCLFLFIDKSVLFATSSWGCIGG*

>peptide 3 (30 aa)
ILQVVVVLLVYLCGWTIRTKFVPCVYYYLF*

>peptide 4 (34 aa)
MSQICKHLYLCKNVTSQHSVTAPILPLPLFDILN*

>peptide 5 (74 aa)
MHQETRFFKVKSLYASKIEVQDYKLLCLADVEVRDQKFTLVGILGSWWPILHLPFWEAFSFFRNRIGSILVKTT*

>peptide 6 (58 aa)
MGHVAKSQISCLELAEPSIRDAFQSCVEQGAHRIIVSPFFLFPGRHWSQEVTYAAEAF*

>peptide 7 (48 aa)
YFAGCCCSLSLFMWMDNQNEICPLCILLFILILITFPQIENLKMDYCF*

>peptide 8 (102 aa)
MLVKSLSPYSHAFSSFSASFGTNPSWVPLKSSNSLCCSSKPRNLSRFLCLSTQNGGGFRENSGEVGRGDAVIIVDHGSRRKESNLMLRISRTINKRCFSI
LR*

>peptide 9 (54 aa)
MLFNLALNKVLIALLLVPFFSFLGGIGVRKLHMQRKHFRCVNCICTNYSSCDGW*

Sequence

>CNT0002001
ATATTTTGCAGGTTGTTGTTGTTCTCTTAGTTTATTTATGTGGATGGACAATCAGAACGAAATTTGTCCCTTGTGTATATTATTATTTATTTTGATTTTA
ATTACTTTTCCACAAATTGAAAACCTAAAAATGGATTATTGTTTTTGAGCTAGATGCGGCTGTGTCCCATTGTCCTTTTTTTTAATAGACCATTGCGGCC
ATTGGTTTGCTAATCATTTGCAGGATCACGTTTTCTGATATCAGTTGGTGGAAACCAGAAATTGTGGGTAGAGTTGGATAGGAACGGGGCAAAACAGAAC
TATAGTATCCCGTCTCTCTTGAAAGAAGTGGTGTTGACTTTCTCGTAATCAGTGATGCTGGTGAAGTCTCTATCACCTTATTCTCATGCCTTCTCAAGTT
TTTCTGCAAGTTTTGGAACAAACCCAAGTTGGGTTCCCTTAAAGTCCTCAAATAGCCTCTGCTGTTCCTCCAAGCCTAGAAATTTAAGCAGATTTTTATG
TCTGAGCACTCAAAATGGTGGTGGCTTCAGAGAAAACTCTGGTGAAGTTGGACGTGGAGATGCAGTGATAATTGTGGATCATGGGTCACGTCGCAAAGAG
TCAAATCTCATGCTTAGAATTAGCAGAACCATCAATAAGAGATGCTTTTCAATCTTGCGTTGAACAAGGTGCTCATCGCATTATTGTTAGTCCCTTTTTT
CTCTTTCCTGGGAGGCATTGGAGTCAGGAAGTTACATATGCAGCGGAAGCATTTTAGGTGTGTCAATTGCATCTGCACCAATTATAGCTCATGCGATGGA
TGGTGAGCTGCATATCTGATTGGTATTATGTACTTCAGCTTTTCTGTTTATTTTCTTAGTAACTGTCCTCAGTGCTGTCTTTTTCTTTTCATTGACAAGA
GTGTTTTGTTTGCAACTAGTAGCTGGGGATGCATTGGTGGATGATCATGAATCACAGGACCTTTCAGAGGAGGAAATAAATGTGCATCACTTGTTGAGAT
TGGCTAGGAAACTTTGGCTGCCTGCTTTTTTCTTTCTTACCGTTTGTCAAACTTGGACGACTCAATTACAAATATTATTCATTAAACTTACTCTATTCCT
CCTCAGTACAAAGCCCAACCCTTTCTCTGTCTATGTATTTGTTGATAAGTTGTGCCAACGATATATGCACCAAGAAACTCGATTCTTTAAAGTAAAGTCA
CTTTATGCCAGCAAAATCGAAGTGCAGGACTATAAGCTTCTTTGCTTGGCTGATGTTGAAGTGAGAGATCAAAAGTTCACTTTGGTTGGAATTCTTGGTA
GTTGGTGGCCTATACTGCATTTGCCATTTTGGGAAGCATTCTCTTTTTTCAGAAATAGAATTGGAAGCATCTTGGTGAAAACAACATAACAAGGTAGCCT
GCTAATTTAAAATTAGCACTCCTTCTAAGTTCTATGATGCCCCTTTCCCAAGTCTTCTATTGTGATCAAGTTAATCGTTCTCATTTTAGGGAGTTGGGCC
TCTGTTGGTTTTGTCCCTTTTGGAGCTTCAACTAAATCATGTTATTCATTGAAGATACCATCCCAAAAGTGTTATGCATAGAAGAAGAAAATAAGGGGCA
GGAAATGAGACAGGACTGATTATTACTTGCAAATAAAGTAGCATTTCAAATACTAACTGCCTAGGCTATAAGGTTATCCCTCTCTTGTTTGATGAGTCAA
ATATGCAAACATTTATATCTTTGTAAAAATGTGACATCTCAACATTCTGTCACAGCCCCTATTCTTCCTCTGCCACTTTTTGATATTTTAAATTAATCGT
TAGTATTGAAGTTTAGTTTGTTTGAAAATAGACTTAAATATGTTTTTGTTCATGTAAGTTTGTATTTTTTTAATTTTGGTCCTGGT