Detailed information on CNT0002016 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SJD4|LACS8_ARATH, E-value = 2e-06

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002016

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.7671.9241.8631.1040.120.1510.1180.1111.8551.781.8281.411.0151.3851.12leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.41.51.61.71.81.922.1

Peptides detected in this lncRNA

>peptide 1 (50 aa)
VSTTKTIFYIAGSELFREKQCQIKCGGISVNNNKNLALVNKIDVERVIEH*

>peptide 2 (46 aa)
MEFGKGFLPLVNCLGDWRYRATEFCKEKGFQLVAELWVSTSVSGLD*

>peptide 3 (31 aa)
MINPFLTQRTKNKFAFPGPPRSSILFSKMFI*

>peptide 4 (48 aa)
MCMFLITSTRFWTKINISTIFLALPNGSFALPPNKLCSYFRTTISSVP*

Sequence

>CNT0002016
GGTATCTACTACAAAAACTATTTTTTACATTGCTGGATCCGAACTGTTTAGAGAAAAACAATGTCAAATAAAATGTGGTGGTATCTCGGTAAATAATAAC
AAAAATCTGGCATTGGTAAATAAAATCGATGTTGAAAGAGTTATAGAACATTGACTTAGTTAATAGCCGAAGTTCGGCTATTTTGCATCGTTTTTAAAAA
ACCGTCCTTGAAGGACAAATAAAAACCTTCTCTCTCGAGCCCTATCTGTAAATCTCCCTCCCAACAGCCTCTCCTTCAAATCTTGGTTCCTCTCTCGCCT
TTCAACTTCCGTCGAGGTGCGAAACAACCAATTGAAGCTGGTGTTCGTGTCATTGGTCAGATGTGCATGTTTCTCATAACATCGACGCGCTTTTGGACCA
AGATAAACATCAGCACTATTTTCCTGGCCCTGCCAAATGGGAGCTTTGCCTTGCCACCAAACAAGCTCTGCAGTTACTTCAGGACAACTATCTCGAGTGT
CCCGTGATGGTATAGCATGATCAATCCCTTCTTGACTCAGAGGACCAAAAACAAATTTGCTTTTCCTGGACCACCCAGGTCATCGATACTCTTTTCTAAA
ATGTTTATTTGATCGCAAAGCCATCCCAAACTGGATGCCCTTTATTTCTTCTGTTAAGGGAGAGATGCAACAACAAAGAGAAGAAGCCAAATAACAAAGG
TACAGAGGCATGGAATTTGGCAAAGGTTTTCTTCCACTAGTCAATTGTCTTGGAGATTGGAGGTACAGAGCCACGGAATTTTGTAAAGAAAAAGGGTTCC
AATTAGTAGCTGAGTTATGGGTTTCTACTTCAGTGAGTGGATTGGATTAATATTTAAGTTTAAAGTGCATTTTGATTGTGTTTTATTTTCTTAATTTTTC
TAATGTTGCATGTTTTGAAAAACTCAAATACTTGTTTTAGAATTTGACAGTTGTTGGAGGTTGTATGGGATATGAATCTCCTTTGACTTTAACTTGTACA
TAAAACAAAATAAGAAAAGGGGAAACGGGGGGATGCCACTGCACTGATGCCAACTATGAGGGCAGCTGCACGCGTAATTCTTGATAATGTACGTGAGGGA
GTGCTCAAGAGGGTATTTGATTTGTGACGCCTTTGAATAATACAATCCTACATATCAATATTATGCATTTATGTCTC