Detailed information on CNT0002017 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SJD4|LACS8_ARATH, E-value = 4e-06

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002017

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.8973.1392.3160.950.3450.1740.2040.0641.4191.3621.6671.2141.0480.9940.884leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01230.250.50.751.251.51.752.252.52.753.253.5

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MQEKIPNLILCFFLHKFSLVTIAICYSCYITFLQPIPNQKIHWRCMEKIYACALAVNSRNVK*

>peptide 2 (48 aa)
MCMFLITSTRFWTKINISTIFLALPNGSFALPPNKLCSYFRTTISSVP*

>peptide 3 (31 aa)
MLYHLLATHSKSENPLAMYGKNLRLCTSSEL*

>peptide 4 (35 aa)
MEPSKLQGPFIISNDCLLSLTQKICCLFFFAKSNI*

>peptide 5 (31 aa)
MINPFLTQRTKNKFAFPGPPRSSILFSKMFI*

>peptide 6 (46 aa)
MEFGKGFLPLVNCLGDWRYRATEFCKEKGFQLVAELWVSTSVSGLD*

>peptide 7 (31 aa)
MIFSLLHFDFMQMLDLFHRYCQTNLTYHDGP*

>peptide 8 (50 aa)
VSTTKTIFYIAGSELFREKQCQIKCGGISVNNNKNLALVNKIDVERVIEH*

>peptide 9 (44 aa)
MFVLIVIIFLLSSLNLQVCQICLTTLILIMILKGEMQQQREEAK*

Sequence

>CNT0002017
GGTATCTACTACAAAAACTATTTTTTACATTGCTGGATCCGAACTGTTTAGAGAAAAACAATGTCAAATAAAATGTGGTGGTATCTCGGTAAATAATAAC
AAAAATCTGGCATTGGTAAATAAAATCGATGTTGAAAGAGTTATAGAACATTGACTTAGTTAATAGCCGAAGTTCGGCTATTTTGCATCGTTTTTAAAAA
ACCGTCCTTGAAGGACAAATAAAAACCTTCTCTCTCGAGCCCTATCTGTAAATCTCCCTCCCAACAGCCTCTCCTTCAAATCTTGGTTCCTCTCTCGCCT
TTCAACTTCCGTCGAGGTGCGAAACAACCAATTGAAGCTGGTGTTCGTGTCATTGGTCAGATGTGCATGTTTCTCATAACATCGACGCGCTTTTGGACCA
AGATAAACATCAGCACTATTTTCCTGGCCCTGCCAAATGGGAGCTTTGCCTTGCCACCAAACAAGCTCTGCAGTTACTTCAGGACAACTATCTCGAGTGT
CCCGTGATGGTATAGCATGATCAATCCCTTCTTGACTCAGAGGACCAAAAACAAATTTGCTTTTCCTGGACCACCCAGGTCATCGATACTCTTTTCTAAA
ATGTTTATTTGATCGCAAAGCCATCCCAAACTGGATGCCCTTTATTTCTTCTGTTAAGGTGTGTGCTTGCTTTCCTTCTCACCCTCTATTCTAAGGATCA
GTTTTCTTAAATTACAGAAATCGGGTCTTGTGAGGGAGGGGGGAAATGAAGTCCCTTAGTTGTTCACATTGCTTAAAACATTTACTCATGTTTTTCTTAG
CATCATAAAATATCTGGGTATATTATGGAACCTAGTAAATTGCAAGGGCCTTTCATAATCAGCAATGATTGTCTACTAAGTTTAACACAGAAGATATGTT
GCTTGTTTTTCTTTGCTAAGTCAAACATCTAGCTGGTGTTTTGGAACCTAAGATCCCCTGCCTTTTTGCTAAGGGAAGATAGCCTGACATTAGGATCACG
CTCTAGGCATTCTTGCTTTGGATCCAAATGATTTTTTCTCTCTTGCATTTTGATTTTATGCAAATGTTGGACTTGTTTCACAGATATTGCCAGACAAACC
TGACCTATCACGATGGTCCTTGAAGTATAAGGCATTTGGTCCTAATATTGAATTCTCTTGGCTTGCTCGTAAAATGCAGGAAAAGATCCCAAACTTAATA
CTATGCTTTTTTCTCCATAAATTCTCTTTAGTTACAATTGCTATTTGTTATTCATGCTATATCACCTTCTTGCAACCCATTCCAAATCAGAAAATCCACT
GGCGATGTATGGAAAAAATCTACGCCTGTGCACTAGCAGTGAACTCTAGGAATGTGAAATGAAATGTTTCTAGAATGATTAAAGAATTCCTCGTTGTATC
TTGTTCAAACTATCATATTGTGGTTAGCATGATATGTTTGTACTTATTGTAATAATTTTCCTTTTATCCTCATTGAATTTGCAAGTGTGTCAGATTTGCT
TGACTACATTAATCCTAATTATGATACTAAAGGGAGAGATGCAACAACAAAGAGAAGAAGCCAAATAACAAAGGTACAGAGGCATGGAATTTGGCAAAGG
TTTTCTTCCACTAGTCAATTGTCTTGGAGATTGGAGGTACAGAGCCACGGAATTTTGTAAAGAAAAAGGGTTCCAATTAGTAGCTGAGTTATGGGTTTCT
ACTTCAGTGAGTGGATTGGATTAATATTTAAGTTTAAAGTGCATTTTGATTGTGTTTTATTTTCTTAATTTTTCTAATGTTGCATGTTTTGAAAAACTCA
AATACTTGTTTTAGAATTTGACAGTTGTTGGAGGTTGTATGGGATATGAATCTCCTTTGACTTTAACTTGTACATAAAACAAAATAAGAAAAGGGGAAAC
GGGGGGATGCCACTGCACTGATGCCAACTATGAGGGCAGCTGCACGCGTAATTCTTGATAATGTACGTGAGGGAGTGCTCAAGAGGGTATTTGATTTGTG
ACGCCTTTGAATAATACAATCCTACATATCAATATTATGCATTTATGTCTC