Detailed information on CNT0002022 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q40784|AAPC_CENCI, E-value = 2e-12

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002022

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.2942.0450.73100.7292.5942.7472.4641.9972.5951.1942.491.84300leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.83

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MKNQMVFVQQLEAVGTFLLSFFSHPASSEGLHV*

>peptide 2 (50 aa)
MSFSCIVSSFTTALIFIGKFVFSFFLSFTSFLLLQVFHICFLFLIFLNFL*

>peptide 3 (45 aa)
MSSISRLAIESFDSLNINAIGAKCILYLKKKGEQTVFVIAIFIFE*

>peptide 4 (39 aa)
MSSKAIWKQHKPIREGISTCLARETGCGHWIGTLHLFLP*

>peptide 5 (35 aa)
MLGLQGRKEYKLKCFQMMFMELKGHNPTLKATLTL*

>peptide 6 (111 aa)
MWSLDRDPSPLPPLDNQSFVELILKSTKVDLKTPCSFEFRLRISLNADNLILIPQVRNTANKAFSFSFTLCNYLSVSDIRKKNNIPAAQINIQHSQAFQF
QTVGAEFALSF*

Sequence

>CNT0002022
TTTTAATGAAAGGGTTGCATGCTTTAGGAGTGTTAAATTTTTTTCCTACCTTTGTTTGACAGATATGTTATAATTTTTTTTTCATATTAATATACATCTC
TATGTCGTTTTCTTGCATTGTGAGTTCATTCACCACTGCATTGATATTCATTGGTAAGTTTGTTTTCTCATTTTTTTTGTCATTTACATCTTTCTTATTA
TTACAGGTATTTCATATTTGTTTTTTGTTTTTAATTTTCCTCAATTTTCTTTAATGGATTTCTTGATGTTTTCCATATGAAAAATCAAATGGTTTTCGTC
CAACAACTAGAAGCTGTGGGAACTTTCTTACTTTCTTTCTTTTCTCATCCTGCAAGTTCTGAAGGACTACATGTTTGATTGTTTCTTGGAAGAATCATCG
AAAGGAAGAACTTCTTTTTATGAGCAGTAAGGCTATCTGGAAACAACATAAACCAATCAGAGAAGGAATATCAACTTGTCTAGCACGAGAAACAGGATGT
GGTCATTGGATAGGGACCCTTCACCTCTTCCTCCCTTAGACAATCAGTCATTTGTGGAACTAATATTGAAGTCAACAAAAGTTGACTTAAAGACACCCTG
TAGTTTTGAGTTTCGGCTTCGCATCTCTCTCAATGCTGACAACCTAATTTTGATTCCGCAAGTCAGAAACACTGCTAACAAAGCATTTTCTTTTTCCTTT
ACACTATGCAACTATTTATCGGTATCAGATATCAGGAAAAAAAACAACATCCCTGCTGCACAAATTAATATCCAACACTCTCAAGCTTTCCAGTTTCAAA
CTGTGGGCGCTGAATTTGCTTTGTCTTTCTGAGTATGCTCGGGCTTCAAGGGAGAAAGGAGTACAAGTTAAAGTGTTTCCAAATGATGTTCATGGAATTG
AAAGGACACAATCCGACTTTGAAAGCTACATTAACATTGTGATGTGGTTCAACAAGTATTGCAAATGAGCAGCATTTCCAGGCTAGCGATTGAATCATTT
GACTCCCTTAATATTAATGCTATTGGGGCAAAATGCATTTTGTATTTGAAAAAGAAAGGGGAACAAACTGTATTTGTCATTGCTATCTTTATTTTTGAAT
AAATAATTTGGTTCAGTGAAGGACGTATTTTAGCTTTGGATTATGAAAAAAGACAAGACATTCTGA