Detailed information on CNT0002029 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002029

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0007.0840.140004.3274.4985.525.6195.3265.6558.329leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.588.59

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MLEHVLFEKTEICSLTGIMKFKEAMNDQQNKTEN*

>peptide 2 (36 aa)
PLFISVNVQSSISIIHHCKCWNMFCLKKLKYVLSLG*

>peptide 3 (32 aa)
MILLNTTLKNEDEYELLIGLVEKGELLWHMII*

>peptide 4 (91 aa)
MHHLIRAILIHLLASPSGAGAGFGSSGGGGGGGSPPSMQLLHFFSTQPSMSFSPLPPKCLPPHNLAIIPAMTPTIVITAMTTTSVSIDLCE*

Sequence

>CNT0002029
CCCCTTTTCATTTCTGTGAATGTCCAATCTAGCATAAGCATCATACATCACTGCAAATGTTGGAACATGTTTTGTTTGAAAAAACTGAAATATGTTCTCT
CACTGGGATAATGAAGTTTAAAGAAGCAATGAATGACCAACAAAATAAAACTGAAAACTGAAAGTCCAATAGCAGCAACAAGGTGAATCTAACATGAATA
GTTTTAGGTTTTAGAACTAACACAATGCTACTCTATACATCAGTTAAAGCTATGTAACCTTTCCCCAACATTTGTATCACTTGGCTAGCCAAAACAGAGC
ATTTTATCAAGTTCTATACTGACTTACAATGTTTGTGTTAGAATAGAATGCATCATCTGATCCGAGCCATTTTGATTCATTTACTTGCATCCCCTTCCGG
TGCTGGTGCTGGCTTTGGTTCTTCAGGTGGAGGAGGTGGAGGTGGGAGTCCTCCATCAATGCAACTTCTACACTTCTTTTCAACCCAACCTTCTATGTCA
TTCTCCCCATTGCCCCCAAAGTGCCTTCCACCACACAATCTAGCAATCATTCCTGCAATGACACCAACTATTGTGATCACTGCTATGACCACCACCAGTG
TCTCAATTGACCTATGTGAATAACGGTTTGGTTCCACCACTTTTGGTGGTGTCTCTACAAAGGGTTGCATTTCACTCCCCATCTTGAACAAAATGATTCT
GCTCAACACAACCCTGAAGAATGAAGATGAATATGAACTCTTGATTGGCCTAGTTGAAAAGGGTGAGCTATTATGGCATATGATAATATGATTTATTGCA
AATTGAGAAATAAGAGAAAAAAATGGGGGAAGTGAGACTGCACAAAGTTGGATTCTGATTTCCGAATATAGAGGATAGAGTACACAGTAATAGTGTCAAA
GTGAGTGGGGTATCATTAACTACTACTGATAACTTAGAAAAAAATGGTGTAGCTATAAAATAGGATTCCAATTGTTATGAATACATGTCATTTTTGTCTT
TGTTGCTTT

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA03G29410.1 Uncharacterized protein protein coding CNT0002029 705 318 CDS_UTR Trans