Detailed information on CNT0002034 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0002034

Peptides detected in this lncRNA

>peptide 1 (34 aa)
ESRYNRQTKVYWKVREYNWEIECIRLDRVSHRSV*

>peptide 2 (84 aa)
MSIIETATAPLWVFAVWLLRRDPLSTFFLRHLGSFHHDPLTNFFLHHLGSLRCRRSHEATLFTTLIILVGLTPLLPPVLQCLPL*

>peptide 3 (72 aa)
MTHSPTSFSTTWVLSAVGDPTKLPSSPLSSSWLVSLPSCHPFYNVYPYSLLCFTFLPIRCCLLDNTITHWFL*

>peptide 4 (44 aa)
MGSRTTRRIVVVEDDKGAERGMPSFNSELPNSNNNNNNNNALSH*

>peptide 5 (41 aa)
MTRELKEECRASILSYPIPTTTTTTTTPYPTRWGWLHGSTSA

>peptide 6 (30 aa)
MFTPIVSSASLFCQSVVVCWIILLPIGFCE*

Sequence

>CNT0002034
GTGAAAGTAGATATAATAGACAGACCAAAGTATATTGGAAAGTGAGAGAGTACAACTGGGAAATTGAGTGTATCCGACTAGACCGAGTTTCCCATAGGTC
TGTGTGAATGACCACTGGGTAGTGTAACGCGCTGTTCGTCGTTATGTCCATCATCGAGACCGCTACTGCACCGCTGTGGGTCTTCGCTGTTTGGCTGCTC
CGCCGTGACCCACTCTCCACTTTCTTTCTCCGCCACCTGGGTTCTTTCCACCATGACCCACTCACCAACTTCTTTCTCCACCACTTGGGTTCTCTCCGCT
GTCGGAGATCCCACGAAGCTACCCTCTTCACCACTCTCATCATCCTGGTTGGTCTCACTCCCCTCTTGCCACCCGTTCTACAATGTTTACCCCTATAGTC
TCCTCTGCTTCACTTTTCTGCCAATCCGTTGTTGTCTGCTGGATAATACTATTACCCATTGGTTTTTGTGAATGACCACTGGGTAGTATAGCGCGTTGTT
CGTCGTGCTGTCCATCATCAAGACTGCTACTGCACCGCCGTAGGTAGTCGCTGTTTCGTTGCTCCACTGTGACCCACTCTCCACTTTCTTTCTCCACCGC
GTGGATTCTTTCCGCCATGACCCACTCACCAACTGATTTAACTGTTTGTTGATTTATGATTTAACTATTGAATTTGTTGTTTGTTTTGGGTTAGGGGTTT
TAAGGTTTTCATGTTTTGTTGAGGTGCAGGGGAATTGATGATGTGGTGGTGAGAATGATGTATGGGGAGTAGAACTACCAGGAGGATTGTTGTTGTTGAA
GATGACAAGGGAGCTGAAAGAGGAATGCCGAGCTTCAATTCTGAGTTACCCAATTCCAACAACAACAACAACAACAACAACGCCTTATCCCACTAGGTGG
GGTTGGCTACATGGATCAACTTCCGCC

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G34660.1 Uncharacterized protein protein coding CNT0002034 197 66 CDS Trans
GLYMA08G08830.1 Uncharacterized protein protein coding CNT0002034 109 51 CDS Trans