Detailed information on CNT0002039 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8S8I2|ULT2_ARATH, E-value = 2e-16

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002039

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)7.4895.2344.5562.1130.9210.5792.0381.4861.6563.2172.2642.2480.7778.6158.306leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.588.599.5

Peptides detected in this lncRNA

>peptide 1 (106 aa)
ELKNITKGDPPQRERSQKIGIKKKFKKMTQEYGDARQSSNRLARVLKVRITCDDDEERSSLKASRGYSRSSTCQVCSTCYCEGCIKCRFEDCNCQECRDF
MLYAKP*

>peptide 2 (43 aa)
RTQEYYKRRSTSTGEKSKNWHKEKVQENDTRVWRCATEFQQAS*

Sequence

>CNT0002039
AGAACTCAAGAATATTACAAAAGGCGATCCACCTCAACGGGAGAGAAGTCAAAAAATTGGCATAAAGAAAAAGTTCAAGAAAATGACACAAGAGTATGGA
GATGCGCGACAGAGTTCCAACAGGCTAGCTAGGGTTTTGAAAGTAAGAATAACATGCGATGATGATGAAGAGAGATCAAGTCTGAAAGCAAGCAGGGGCT
ATTCTCGTTCTTCAACTTGCCAAGTCTGCTCAACTTGTTACTGTGAAGGGTGCATCAAGTGCCGCTTTGAGGATTGCAATTGCCAAGAATGCAGAGACTT
TATGCTATATGCTAAACCTTAACTAGGCTCTGCAAAGTGCCATTTCTGAATTGACTCATTTGGCACCTACATGAAGACATGAAAACTATATGATGTTGCG
GAGAAACTTTTGACCTCTTTATTACTGTTTAAGAAAGTTCTGACTTTTTTTCTTTTCCTTTGGGGAACTTCTAGATGGTACCATCTTGGCCTTTCATTTG
ATCAAATCAGAACTAGTTCTCTTTGAATAATATTGAGCTTGACATGGTACTCAACTTAAATTTTTCTTTTTTATATTATCTTTTTATACAATTGTGTATT
GGAGGTGGATTGATG