Detailed information on CNT0002055 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9JKY0|RCD1_MOUSE, E-value = 4e-06

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002055

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.0531.0141.640.46100000.103000.19600.2890.701leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.41.51.61.71.8

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MECQFCNEDSCNRIQDNSAWSSRYGMSSFDCSMCLN*

>peptide 2 (51 aa)
MLSMNSQGNSFNIPCYFTSKPYSSTINSSVQCSCSFSVLLWLGGSRCVAKF*

>peptide 3 (51 aa)
MYGTGDAVLHVYNLIVVWNVNSAMKIVAIEFKTILHGLQGMECHHLIVVCV*

>peptide 4 (29 aa)
MVQLHILCRVFFSFFLCCIVVTKGIEEQR*

>peptide 5 (35 aa)
MSYCLLLVSSNFVPSCASLKCIIVLSCLWCLLVEA*

Sequence

>CNT0002055
TTTTAATTAAATAAACACATAAGCGCACCTGTTGGAAACCCTAGCTAAAATGCATCCTCACACTCCTAGACTTCCCTTCTTCAAACCCCCTTTCAATTTC
AGATAACCCTCTTTGCACAACGATTCTCAGACTCTGAGCTCTCTCGTCGGTGGTGGTCAGAGAAGGAAAATAGTCGCAAACAAAGGAGAAAAAGACCCCA
TTGACAAGCGGCACATCGTTTGGAGCTCTTTCTACTACCAACAAGGATCGCGGCAGGATGCATGGCGTCTATGGAACACCACGTTCTCGAACTCGGCAAC
CCCGATCTCTGAGAAAATGCTCTCCATGAACTCTCAAGGAAATAGTTTCAATATTCCCTGTTATTTCACCTCCAAACCTTACTCCAGCACAATCAACTCG
AGTGTGCAATGCTCTTGCTCTTTTTCAGTTCTATTGTGGCTAGGTGGCAGCAGATGCGTTGCGAAATTTTGAGTGATTGAAATTCACACTGCAATTGCGG
ATTGTTGCGGTTGCGGACAGCACTGCAACAACAATATTTCAGCTACAATTTAGAACCATGGTCCAGTTACATATACTTTGTCGGGTCTTTTTTTCCTTTT
TCCTCTGCTGCATAGTAGTCACTAAAGGCATAGAAGAACAAAGGTAGGCTCGAGTGTGAATTCTAGCATGTTATATTGATTTGTGTAATTGGGAGCACCC
TTAGACCATGGATATCGTGTTATCTCATTAATTGCGTCTTTTAGAAACTACTTAGTAGTATGGTTTTAATTTTTTAGTAATTATGTATGGAACGGGGGAT
GCAGTGTTACATGTGTATAATTTGATTGTAGTATGGAATGTCAATTCTGCAATGAAGATAGTTGCAATAGAATTCAAGACAATTCTGCATGGTCTTCAAG
GTATGGAATGTCATCATTTGATTGTAGTATGTGTTTGAATTAGATTATTTTGTACTTCAAAAAACTTATAATCAAAAGCTCCTTGGAAGAGTTTTAGGAG
GGGAAAAAAGTTGATTACGAGGGTTAGGGATAGATGTCTTACTGTCTCTTATTAGTTTCTTCTAATTTTGTTCCATCTTGTGCAAGTCTTAAATGCATTA
TTGTACTCTCGTGCTTGTGGTGTTTGTTAGTTGAGGCTTAATTAACATTAAATAATTACATGTATGCACAAATCTTTAACTATTTAAAAAGTTGGGGCTA
TATTGTAAGTCCAAACTAATGAAGATACACTGAGGTGGAATCTGCAGAAGTTTACTTCATGAATTTTCATTGCCTACAAGTTTTAGTTGGTGTAATTTCC
CTATGAGTAGCTGGAGCCTTGAAAATTTATGGCTGCTGCAAAAAAATTTATAATTTTAGATGAGTGTTAAGTTGTACATTTTGTAGGAGAGACTAGCAAT
GTTTGGCTCAG