Detailed information on CNT0002068 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002068

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (65 aa)
AIKQAKDWGSAHYIRKLFVLLLLTATMSKSEQVWDQTWHWMADDIVYNYKKSSTSPSQIFYFSFH*

>peptide 2 (76 aa)
MTLSIIIKNHQQVQVKYFIFHFINGFYNPIWTISASNQGFKILNESQIPNFPNFNRCISNEIGWLSSNVSFNLFII*

>peptide 3 (30 aa)
GNQTSKRLGFSTLYKKAICVVTFNCNNEQI*

Sequence

>CNT0002068
AGGCAATCAAACAAGCAAAAGACTGGGGTTCAGCACATTATATAAGAAAGCTATTTGTGTTGTTACTTTTAACTGCAACAATGAGCAAATCTGAACAAGT
TTGGGACCAAACTTGGCATTGGATGGCTGATGACATTGTCTATAATTATAAAAAATCATCAACAAGTCCAAGTCAAATATTTTATTTTTCATTTCATTAA
TGGCTTTTACAACCCAATCTGGACTATCTCTGCGTCAAATCAAGGCTTCAAAATATTGAACGAGAGTCAGATCCCCAATTTTCCCAACTTTAACAGATGC
ATTTCCAATGAGATTGGCTGGTTGAGCAGTAATGTTTCCTTTAACCTCTTCATCATTTGAAAAAGATCTCTTTCCTCCCAATAAAC

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA06G37470.1 Uncharacterized protein protein coding CNT0002068 538 211 CDS Trans