Detailed information on CNT0002087 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|F4I4W2|HCS2_ARATH, E-value = 3e-26

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0023848, E-value = 3e-08 (A. trichopoda)

Expression of CNT0002087

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)4.3753.5115.3033.3286.3491.5953.7451.6722.6092.0862.9182.4791.8355.7411.688leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.57

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MTIICVSSTLMVIALTFSKDWSEGNSSEQDSLTHLTRGNNNSYALCI*

>peptide 2 (66 aa)
MLTTSGQRVVVQEKNEDKVIEHVVTIQGLTSSGYLLAVGDDNHMCELHPDGNSFDFFKGLVRRKLQ*

Sequence

>CNT0002087
CTTGAATTATACGACACATTGACATGTGCTCCAAATATCACAAAGAATGTGAGCTAAAGGCTGCTTGTTGGCATGGGTAAAGTTGAAGGAGAAGTTAGGG
ATCATGATTGAGGTTGCAAAATTGAAATATGTTAACAACAAGTGGACAGAGAGTTGTTGTACAGGAGAAGAATGAGGACAAAGTGATCGAACATGTGGTA
ACTATTCAGGGGTTGACATCCTCGGGATATTTGCTGGCTGTCGGTGATGACAATCATATGTGTGAGCTCCACCCTGATGGTAATAGCTTTGACTTTTTCA
AAGGACTGGTCAGAAGGAAACTCCAGTGAACAAGATTCCTTGACACATCTCACAAGAGGCAACAACAACTCTTACGCACTTTGTATATAATACGCAGGCT
TTGGCTTCAGAGCTAAGAATTTTCCAATAAATATAAGCTTTTGGCTTCAGTGCTAAGAACTTTCCAATAAACATCATATTTGTTAAATACATTTTGTCAT
TAGAAATTTCAGGGCTTTTGTATTCCATTTGTGAATTTCCGTCAAACTTGCAATCCCTTTCCTTGTCCGGTCAAACAAGATCTTCTATACATCATGGCAC
TTAAAAAACATCATGCAGTTGCAACCAAAATAATTACGGATTTTTTTCCTCTTGATTGGACCTAGTTCATGATTGCTTTACTCAATCATTTGTAAGGAGT
ATTGTGGTCCTTCTTAGCCAGCTATGAAATGATTTGAAAAGAAAAAAAAAAGTTTCTATGATTCATTGTTTTGCTCAATAA